UniProtKB - A0A1S3GBZ0 (A0A1S3GBZ0_DIPOR)
Protein
Submitted name:
protein polybromo-1 isoform X2
Gene
Pbrm1
Organism
Dipodomys ordii (Ord's kangaroo rat)
Status
Functioni
GO - Molecular functioni
- chromatin binding Source: InterPro
- DNA binding Source: UniProtKB-KW
GO - Biological processi
- chromatin remodeling Source: InterPro
Keywordsi
Biological process | Transcription, Transcription regulationARBA annotation |
Names & Taxonomyi
Protein namesi | Submitted name: protein polybromo-1 isoform X2Imported |
Gene namesi | Name:Pbrm1Imported |
Organismi | Dipodomys ordii (Ord's kangaroo rat)Imported |
Taxonomic identifieri | 10020 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Castorimorpha › Heteromyidae › Dipodomyinae › Dipodomys |
Proteomesi |
|
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 85 – 155 | BromoInterPro annotationAdd BLAST | 71 | |
Domaini | 221 – 291 | BromoInterPro annotationAdd BLAST | 71 | |
Domaini | 421 – 491 | BromoInterPro annotationAdd BLAST | 71 | |
Domaini | 559 – 629 | BromoInterPro annotationAdd BLAST | 71 | |
Domaini | 697 – 767 | BromoInterPro annotationAdd BLAST | 71 | |
Domaini | 838 – 883 | BromoInterPro annotationAdd BLAST | 46 | |
Domaini | 977 – 1095 | BAHInterPro annotationAdd BLAST | 119 | |
Domaini | 1177 – 1293 | BAHInterPro annotationAdd BLAST | 117 | |
Domaini | 1400 – 1468 | HMG boxInterPro annotationAdd BLAST | 69 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 22 – 59 | DisorderedSequence analysisAdd BLAST | 38 | |
Regioni | 175 – 199 | DisorderedSequence analysisAdd BLAST | 25 | |
Regioni | 508 – 538 | DisorderedSequence analysisAdd BLAST | 31 | |
Regioni | 646 – 674 | DisorderedSequence analysisAdd BLAST | 29 | |
Regioni | 923 – 962 | DisorderedSequence analysisAdd BLAST | 40 | |
Regioni | 1375 – 1399 | DisorderedSequence analysisAdd BLAST | 25 | |
Regioni | 1452 – 1481 | DisorderedSequence analysisAdd BLAST | 30 | |
Regioni | 1571 – 1602 | DisorderedSequence analysisAdd BLAST | 32 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 26 – 40 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 646 – 660 | PolyampholyteSequence analysisAdd BLAST | 15 | |
Compositional biasi | 923 – 954 | PolyampholyteSequence analysisAdd BLAST | 32 | |
Compositional biasi | 1588 – 1602 | Pro-richSequence analysisAdd BLAST | 15 |
Keywords - Domaini
BromodomainPROSITE-ProRule annotationARBA annotationFamily and domain databases
CDDi | cd05515, Bromo_polybromo_V, 1 hit |
Gene3Di | 1.20.920.10, 6 hits 2.30.30.490, 2 hits |
InterProi | View protein in InterPro IPR001025, BAH_dom IPR043151, BAH_sf IPR001487, Bromodomain IPR036427, Bromodomain-like_sf IPR018359, Bromodomain_CS IPR009071, HMG_box_dom IPR036910, HMG_box_dom_sf IPR037968, PBRM1_BD5 IPR037382, Rsc/polybromo |
PANTHERi | PTHR16062, PTHR16062, 2 hits |
Pfami | View protein in Pfam PF01426, BAH, 2 hits PF00439, Bromodomain, 6 hits PF00505, HMG_box, 1 hit |
PRINTSi | PR00503, BROMODOMAIN |
SMARTi | View protein in SMART SM00439, BAH, 2 hits SM00297, BROMO, 6 hits SM00398, HMG, 1 hit |
SUPFAMi | SSF47095, SSF47095, 1 hit SSF47370, SSF47370, 6 hits |
PROSITEi | View protein in PROSITE PS51038, BAH, 2 hits PS00633, BROMODOMAIN_1, 5 hits PS50014, BROMODOMAIN_2, 6 hits PS50118, HMG_BOX_2, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 12 potential isoforms that are computationally mapped.Show allAlign All
A0A1S3GBZ0-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MRRLAFRGAG CALVKLKKLD SMGSKRRRAT SPSSSVSGDF DDGHHSIPTP
60 70 80 90 100
GPSRKRRRLS NLPTVDPIAV CHELYNTIRD YKDEQGRLLC ELFIRAPKRR
110 120 130 140 150
NQPDYYEVVS QPIDLMKIQQ KLKMEEYDDV NLLTADFQLL FNNAKAYYKP
160 170 180 190 200
DSPEYKAACK LWDLYLRTRN EFVQKGEADD EDDDDDGQDN RGTVTEGSSP
210 220 230 240 250
SYLKEILEQL LEAIVVATNP SGRLISELFQ KLPSKVQYPD YYAIIKEPID
260 270 280 290 300
LKTIAQRIQN GSYKSIHAMA KDIDLLAKNA KTYNEPGSQV FKDANSIKKI
310 320 330 340 350
FYMKKAEIEH HEMAKSSLRI RTASNLAAAR LTGPSHSKGS LGEERNPTSK
360 370 380 390 400
YYRNKRAVQG GRLSAITMAL QYGSESEEDA ALAAARYEEG ESEAESITSF
410 420 430 440 450
MDVSNPFYQL YDTVRNCRNN QGQLIAEPFF HLPSKKKYPD YYQQIKMPIS
460 470 480 490 500
LQQIRTKLKN QEYETLDHLE CDLNLMFENA KRYNVPNSAI YKRVLKLQQV
510 520 530 540 550
MQAKKKELAR RDDIEDGDSM ISSATSDTGS AKRKSKKNIR KQRMKILFNV
560 570 580 590 600
VLEAREPGSG RRLCDLFMVK PSKKDYPDYY KIILEPMDLK IIEHNIRNDK
610 620 630 640 650
YSGEEGMIED MKLMFRNARH YNEEGSQVYN DAHILEKLLK DKRKELGPLP
660 670 680 690 700
DDDDMASPKL KLSRKSGVSP KKSKYMTPMQ QKLNEVYEAV KNYTDKRGRR
710 720 730 740 750
LSAIFLRLPS RSELPDYYLT IKKPMDMEKI RSHMMANKYQ DIDSMVEDFV
760 770 780 790 800
MMFNNACTYN EPESLIYKDA LVLHKVLLET RRDLEGDEDS HVPNVTLLIQ
810 820 830 840 850
ELIHNLFVSV MSHQDDEGRC YSDSLAEIPA VDPNFPNKPP LTFDIIRKNV
860 870 880 890 900
ENNRYRRLDL FQEHMFEVLE RARRMNRTDS EIYEDAVELQ QFFIKIRDEL
910 920 930 940 950
CKNGEILLSP ALSYTTKHLH NDVEKEKKEK LPKEIEEDKL KREEEKREAE
960 970 980 990 1000
KSEDSSGATG LSGLHRTYSQ DCSFKNSMYH VGDYVYVEPA EANLQPHIVC
1010 1020 1030 1040 1050
IERLWEDSAG EKWLYGCWFY RPNETFHLAT RKFLEKEVFK SDYYNKVPVS
1060 1070 1080 1090 1100
KILGKCVVMF VKEYFKLCPE NFRDEDVFVC ESRYSAKTKS FKKIKLWTMP
1110 1120 1130 1140 1150
ISSVRFVPRD VPLPVVRVAS VFANADKGDD EKNTDISEDS RVEDNFNLEK
1160 1170 1180 1190 1200
EKEDVPVEMS NGEPGCHYFE QLHYNDMWLK VGDCVFIKSH GLVRPRVGRI
1210 1220 1230 1240 1250
EKVWVRDGAA YFYGPIFIHP EETEHEPTKM FYKKEVFLSN LEETCPMTCI
1260 1270 1280 1290 1300
LGKCAVLSFK DFLSCRPTEI PENDILLCES RYNESDKQMK KFKGLKRFSL
1310 1320 1330 1340 1350
SAKVVDDEIY YFRKPIVPQK EPSPLLEKKI QLLEAKFAEL EGGDDDIEEM
1360 1370 1380 1390 1400
GEEDNEVIEP PSLPQLQTPL ASELDLMPYT PPQSTPKSAK GSAKKEGSKR
1410 1420 1430 1440 1450
KINMSGYILF SSEMRAVIKA QHPDYSFGEL SRLVGTEWRN LETAKKAEYE
1460 1470 1480 1490 1500
ERAAKVAEQQ ERERAAQQQQ PSASPRAGTP VGALMGVVPP PTPMGMLNQQ
1510 1520 1530 1540 1550
LTPVAGMMGG YPPGLPPLQG PVDGLVSMGS MQPLHPGGPP PHHLPPGVPG
1560 1570 1580 1590 1600
LPGIPPPGVM NQGVAPMVGT PAPGGSPYGQ QVGVLGPPGQ QAPPPYPSPH
1610 1620 1630 1640 1650
PAGPPVIQQP TTPIFVAPPP KTQRLLHSEA YLKYIEGLSA ESNSISKWDQ
1660 1670 1680 1690 1700
TLAARRRDIH LSKEQESRLP SHWLKSKGAH TTMADALWRL RDLMLRDTLN
1710
IRQAYNLENV
Computationally mapped potential isoform sequencesi
There are 12 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A1S3GBL4 | A0A1S3GBL4_DIPOR | protein polybromo-1 isoform X3 | Pbrm1 | 1,704 | Annotation score: | ||
A0A1S3GDA5 | A0A1S3GDA5_DIPOR | protein polybromo-1 isoform X1 | Pbrm1 | 1,725 | Annotation score: | ||
A0A1S3GBK5 | A0A1S3GBK5_DIPOR | protein polybromo-1 isoform X5 | Pbrm1 | 1,689 | Annotation score: | ||
A0A1S3GBL0 | A0A1S3GBL0_DIPOR | protein polybromo-1 isoform X9 | Pbrm1 | 1,670 | Annotation score: | ||
A0A1S3GBL9 | A0A1S3GBL9_DIPOR | protein polybromo-1 isoform X7 | Pbrm1 | 1,673 | Annotation score: | ||
A0A1S3GBM3 | A0A1S3GBM3_DIPOR | protein polybromo-1 isoform X12 | Pbrm1 | 1,618 | Annotation score: | ||
A0A1S3GBZ9 | A0A1S3GBZ9_DIPOR | protein polybromo-1 isoform X11 | Pbrm1 | 1,623 | Annotation score: | ||
A0A1S3GDA9 | A0A1S3GDA9_DIPOR | protein polybromo-1 isoform X6 | Pbrm1 | 1,678 | Annotation score: | ||
A0A1S3GDB4 | A0A1S3GDB4_DIPOR | protein polybromo-1 isoform X10 | Pbrm1 | 1,655 | Annotation score: | ||
A0A1S3GDZ3 | A0A1S3GDZ3_DIPOR | protein polybromo-1 isoform X4 | Pbrm1 | 1,693 | Annotation score: | ||
There are more potential isoformsShow all |
Sequence databases
RefSeqi | XP_012886215.1, XM_013030761.1 |
Genome annotation databases
GeneIDi | 105996597 |
Similar proteinsi
Cross-referencesi
Sequence databases
RefSeqi | XP_012886215.1, XM_013030761.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
GeneIDi | 105996597 |
Organism-specific databases
CTDi | 55193 |
Family and domain databases
CDDi | cd05515, Bromo_polybromo_V, 1 hit |
Gene3Di | 1.20.920.10, 6 hits 2.30.30.490, 2 hits |
InterProi | View protein in InterPro IPR001025, BAH_dom IPR043151, BAH_sf IPR001487, Bromodomain IPR036427, Bromodomain-like_sf IPR018359, Bromodomain_CS IPR009071, HMG_box_dom IPR036910, HMG_box_dom_sf IPR037968, PBRM1_BD5 IPR037382, Rsc/polybromo |
PANTHERi | PTHR16062, PTHR16062, 2 hits |
Pfami | View protein in Pfam PF01426, BAH, 2 hits PF00439, Bromodomain, 6 hits PF00505, HMG_box, 1 hit |
PRINTSi | PR00503, BROMODOMAIN |
SMARTi | View protein in SMART SM00439, BAH, 2 hits SM00297, BROMO, 6 hits SM00398, HMG, 1 hit |
SUPFAMi | SSF47095, SSF47095, 1 hit SSF47370, SSF47370, 6 hits |
PROSITEi | View protein in PROSITE PS51038, BAH, 2 hits PS00633, BROMODOMAIN_1, 5 hits PS50014, BROMODOMAIN_2, 6 hits PS50118, HMG_BOX_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | A0A1S3GBZ0_DIPOR | |
Accessioni | A0A1S3GBZ0Primary (citable) accession number: A0A1S3GBZ0 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 12, 2017 |
Last sequence update: | April 12, 2017 | |
Last modified: | April 7, 2021 | |
This is version 19 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |