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Entry version 8 (16 Jan 2019)
Sequence version 1 (12 Apr 2017)
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Protein
Submitted name:

collagen alpha-1(XXVII) chain

Gene

Col27a1

Organism
Dipodomys ordii (Ord's kangaroo rat)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
collagen alpha-1(XXVII) chainImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Col27a1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDipodomys ordii (Ord's kangaroo rat)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10020 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaCastorimorphaHeteromyidaeDipodomyinaeDipodomys
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000081671 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome assembly

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1565 – 1765Fibrillar collagen NC1InterPro annotationAdd BLAST201

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

CollagenImported

Phylogenomic databases

Database of Orthologous Groups

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OrthoDBi
200318at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR000885 Fib_collagen_C
IPR001791 Laminin_G

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01410 COLFI, 2 hits
PF01391 Collagen, 8 hits

ProDom; a protein domain database

More...
ProDomi
View protein in ProDom or Entries sharing at least one domain
PD002078 Fib_collagen_C, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00038 COLFI, 1 hit
SM00210 TSPN, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF49899 SSF49899, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS51461 NC1_FIB, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A1S3G9R3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHERGVRTLW GVFQHCRPNS WDWTAAAEHR GARVWRQLRR PREPCESRRL
60 70 80 90 100
SRAPRHQDHK AEGFLFAWIL VSFACHLAST QGAPEDVDVL QRLGLSWTKA
110 120 130 140 150
GGSRSPAPPG VIPFQSGFIF TQRARLQAPT ATVLPAALGT KLALVLSLCS
160 170 180 190 200
HRVNHAFLFA VRNRRHRLQL GLQFLPGKTV VHLGPRRSVA FDLDVHDGRW
210 220 230 240 250
HHLALEFRSR SVTLVTACGR RRVPIPLPFQ RDPTLDPQGS FLLGKMSPHA
260 270 280 290 300
VQFEGALCQF SVHPVAQVAH NYCAYLRRQC GRADLYRPQL GAPFPPDSGS
310 320 330 340 350
PFAFQPDLAF LGLENLTSAT PALGTRPTGR VPTATVAPAT ALRPLRTNPG
360 370 380 390 400
DPPQHSARGD PAWTPLPPAK LSTRKAPPPL PPASLNSATQ TPRPAVAQPR
410 420 430 440 450
QKISATENPK PSAPSVIPAK SPHPTLKTAP PSFTKSAPPS QKPVRPTSVP
460 470 480 490 500
ALAIASGAQG KPTQRGPQTP RPPLPSARPL PPASGSSKKS IPLVAQTEAK
510 520 530 540 550
LTSRAGKPVS ARPSTPKPPQ PTILHQSPAL SSGSTRTARP PATTIVSPTS
560 570 580 590 600
HTGTPRTAPP TFALGPVAAG SKKPTGLEAS KKAGSKSSPW NPVPFWSGET
610 620 630 640 650
FGDVPLRDLT TRPSRQTTPA PVLAPARVLS STSWPTNSGY SFFHLAGPTP
660 670 680 690 700
FPLLLGPPGP KGDCGLPGPP GLPGLPGPPG TRGPRGPPGP YGNPGLPGPP
710 720 730 740 750
GAKGQKGDPG LSPGQAHDGA KGDMGLPGLS GDPGPRGRKG HKGYPGPAGH
760 770 780 790 800
PGEEGQLGAE GSPGAKGYPG RQGLPGPVGE PGPKGSRGYI GLPGLFGLPG
810 820 830 840 850
SDGERGVPGV PGKRGKMGRP GFPGDFGERG PPGLDGNPGD LGLPGPPGVT
860 870 880 890 900
GLIGDMGALG PIGYPGPKGM KGLMGGVGEP GLKGDKGEQG IPGVAGDPGF
910 920 930 940 950
QGDKGSQGLP GFPGARGKPG PLGRTGDKGS LGFPGPPGPE GFPGDIGPPG
960 970 980 990 1000
DNGPEGLKGK PGARGLPGPS GQLGPEGDEG PTGPPGIPGL EGQSGRKGFP
1010 1020 1030 1040 1050
GRPGPDGLKG EPGDPGRPGP VGEQGLLGFI GLLGEPGITG EKGDRGMMGP
1060 1070 1080 1090 1100
PGAPGPKGSM GHPGMPGSVG TPGEPGPPGA PGSRGPPGVR GAKGRRGPRG
1110 1120 1130 1140 1150
PDGPAGEQGS KGLKGPAGPR GRPGQPGQQG AAGERGHSGP QGFLGIPGPS
1160 1170 1180 1190 1200
GPPGAKGLPG ELGPQGPQGL VGPPGEMGPK GPPGAVGEPG LPGEAGMKGD
1210 1220 1230 1240 1250
VGPLGTPGEQ GLIGQRGEPG LEGDLGPAGP DGLKGDRGDP GPDGERGEKG
1260 1270 1280 1290 1300
QEGLKGEDGP PGPPGITGIR GPEGKPGKQG EKGRTGAKGT KGYQGQLGEM
1310 1320 1330 1340 1350
GVPGDPGPPG TPGPKGARGS LGPTGAPGRM GSQGEPGLAG YNGHKGVVGP
1360 1370 1380 1390 1400
LGPPGPKGEK GEQGEDGKAE GPPGPPGDRG PVGDRGERGE PGDPGYPGES
1410 1420 1430 1440 1450
GLPGQLGPPG KRGTEGGMGL PGSQGEPGSK GQPGNSGEMG FPGVAGLFGP
1460 1470 1480 1490 1500
KGPPGDIGFK GIQGPRGPPG LMGKEGIIGP LGILGPSGLP GPKGDKGSRG
1510 1520 1530 1540 1550
DWGLQGPRGP PGPRGQPGPP GPPGQTVLFQ RDDLGAAFQT WMDMDGALRP
1560 1570 1580 1590 1600
EEYSYSDHLV LDQGGQIFKT LHYLSNLIQS IKTPLGTKEN PARVCRDLMD
1610 1620 1630 1640 1650
CEQKMVDGTY WVDPNLGCSS DTIEVSCNFT HGGQTCLKPI TASKVEFAVS
1660 1670 1680 1690 1700
RVQMNFLHLL SSEVTQHITI HCLNLTVWQE GPGHSLAKQA VRFRAWNGQI
1710 1720 1730 1740 1750
FEAGGQFRPE VSVDGCKVHD GRWHQTHFTF RTQDPQQLPI VSVDNLPPAS
1760
SGKQYRLEVG PACFL
Length:1,765
Mass (Da):179,541
Last modified:April 12, 2017 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDC5D227E26F1FBB9
GO

Sequence databases

NCBI Reference Sequences

More...
RefSeqi
XP_012885568.1, XM_013030114.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
105996135

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

RefSeqiXP_012885568.1, XM_013030114.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi105996135

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
85301

Phylogenomic databases

OrthoDBi200318at2759

Family and domain databases

InterProiView protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR000885 Fib_collagen_C
IPR001791 Laminin_G
PfamiView protein in Pfam
PF01410 COLFI, 2 hits
PF01391 Collagen, 8 hits
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002078 Fib_collagen_C, 1 hit
SMARTiView protein in SMART
SM00038 COLFI, 1 hit
SM00210 TSPN, 1 hit
SUPFAMiSSF49899 SSF49899, 1 hit
PROSITEiView protein in PROSITE
PS51461 NC1_FIB, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A1S3G9R3_DIPOR
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A1S3G9R3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: January 16, 2019
This is version 8 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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