UniProtKB - A0A1S3F0I9 (A0A1S3F0I9_DIPOR)
Protein
Submitted name:
CUGBP Elav-like family member 2 isoform X4
Gene
Celf2
Organism
Dipodomys ordii (Ord's kangaroo rat)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: UniProtKB-UniRule
Keywordsi
Molecular function | RNA-bindingPROSITE-ProRule annotationARBA annotation |
Names & Taxonomyi
Protein namesi | Submitted name: CUGBP Elav-like family member 2 isoform X4Imported |
Gene namesi | Name:Celf2Imported |
Organismi | Dipodomys ordii (Ord's kangaroo rat)Imported |
Taxonomic identifieri | 10020 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Castorimorpha › Heteromyidae › Dipodomyinae › Dipodomys |
Proteomesi |
|
Subcellular locationi
Nucleus
- nucleus Source: UniProtKB-SubCell
Other locations
- cytoplasm Source: UniProtKB-SubCell
- ribonucleoprotein complex Source: InterPro
Keywords - Cellular componenti
NucleusARBA annotationFamily & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 16 – 99 | RRMInterPro annotationAdd BLAST | 84 | |
Domaini | 108 – 188 | RRMInterPro annotationAdd BLAST | 81 | |
Domaini | 399 – 477 | RRMInterPro annotationAdd BLAST | 79 |
Sequence similaritiesi
Belongs to the CELF/BRUNOL family.ARBA annotation
Keywords - Domaini
RepeatARBA annotationFamily and domain databases
CDDi | cd12631, RRM1_CELF1_2_Bruno, 1 hit cd12634, RRM2_CELF1_2, 1 hit cd12638, RRM3_CELF1_2, 1 hit |
Gene3Di | 3.30.70.330, 3 hits |
InterProi | View protein in InterPro IPR034196, CELF1/2_RRM1 IPR034198, CELF1/2_RRM2 IPR034199, CELF1/2_RRM3 IPR002343, Hud_Sxl_RNA IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom |
Pfami | View protein in Pfam PF00076, RRM_1, 3 hits |
PRINTSi | PR00961, HUDSXLRNA |
SMARTi | View protein in SMART SM00360, RRM, 3 hits |
SUPFAMi | SSF54928, SSF54928, 2 hits |
PROSITEi | View protein in PROSITE PS50102, RRM, 3 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.Show allAlign All
A0A1S3F0I9-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MNGALDHSDQ PDPDAIKMFV GQIPRSWSEK ELKELFEPYG AVYQINVLRD
60 70 80 90 100
RSQNPPQSKG CCFVTFYTRK AALEAQNALH NIKTLPGMHH PIQMKPADSE
110 120 130 140 150
KSNAVEDRKL FIGMVSKKCN ENDIRVMFSP FGQIEECRIL RGPDGLSRGC
160 170 180 190 200
AFVTFSTRAM AQNAIKAMHQ SQTMEGCSSP IVVKFADTQK DKEQRRLQQQ
210 220 230 240 250
LAQQMQQLNT ATWGNLTGLG GLTPQYLALL QQATSSSNLG AFSGIQQMAG
260 270 280 290 300
MNALQLQNLA TLAAAAAAAQ TSATSTNANP LSTTSSALGA LTSPVAASTP
310 320 330 340 350
NSTAGAAMNS LTSLGTLQGL AGATVGLNNI NALAGMAALN GGLGATGLTN
360 370 380 390 400
GTAGTMDALT QAYSGIQQYA AAALPTLYSQ SLLQQQSAAG SQKEGPEGAN
410 420 430 440 450
LFIYHLPQEF GDQDILQMFM PFGNVISAKV FIDKQTNLSK CFGFVSYDNP
460 470 480
VSAQAAIQAM NGFQIGMKRL KVQLKRSKND SKPY
Computationally mapped potential isoform sequencesi
There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A1S3F0G5 | A0A1S3F0G5_DIPOR | CUGBP Elav-like family member 2 iso... | Celf2 | 490 | Annotation score: | ||
A0A1S3F0I6 | A0A1S3F0I6_DIPOR | CUGBP Elav-like family member 2 iso... | Celf2 | 494 | Annotation score: | ||
A0A1S3F0J0 | A0A1S3F0J0_DIPOR | CUGBP Elav-like family member 2 iso... | Celf2 | 488 | Annotation score: | ||
A0A1S3F1P9 | A0A1S3F1P9_DIPOR | CUGBP Elav-like family member 2 iso... | Celf2 | 436 | Annotation score: | ||
A0A1S3F1U5 | A0A1S3F1U5_DIPOR | CUGBP Elav-like family member 2 iso... | Celf2 | 440 | Annotation score: | ||
A0A1S3F2Y6 | A0A1S3F2Y6_DIPOR | CUGBP Elav-like family member 2 iso... | Celf2 | 446 | Annotation score: |
Sequence databases
RefSeqi | XP_012870126.1, XM_013014672.1 |
Genome annotation databases
GeneIDi | 105984482 |
Similar proteinsi
Cross-referencesi
Sequence databases
RefSeqi | XP_012870126.1, XM_013014672.1 |
3D structure databases
SMRi | A0A1S3F0I9 |
ModBasei | Search... |
Genome annotation databases
GeneIDi | 105984482 |
Organism-specific databases
CTDi | 10659 |
Family and domain databases
CDDi | cd12631, RRM1_CELF1_2_Bruno, 1 hit cd12634, RRM2_CELF1_2, 1 hit cd12638, RRM3_CELF1_2, 1 hit |
Gene3Di | 3.30.70.330, 3 hits |
InterProi | View protein in InterPro IPR034196, CELF1/2_RRM1 IPR034198, CELF1/2_RRM2 IPR034199, CELF1/2_RRM3 IPR002343, Hud_Sxl_RNA IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom |
Pfami | View protein in Pfam PF00076, RRM_1, 3 hits |
PRINTSi | PR00961, HUDSXLRNA |
SMARTi | View protein in SMART SM00360, RRM, 3 hits |
SUPFAMi | SSF54928, SSF54928, 2 hits |
PROSITEi | View protein in PROSITE PS50102, RRM, 3 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | A0A1S3F0I9_DIPOR | |
Accessioni | A0A1S3F0I9Primary (citable) accession number: A0A1S3F0I9 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 12, 2017 |
Last sequence update: | April 12, 2017 | |
Last modified: | October 7, 2020 | |
This is version 15 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |