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Protein
Submitted name:

PDZ and LIM domain protein 4 isoform X1

Gene

PDLIM4

Organism
Erinaceus europaeus (Western European hedgehog)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PDZ and LIM domain protein 4 isoform X1Imported
Gene namesi
Name:PDLIM4Imported
OrganismiErinaceus europaeus (Western European hedgehog)Imported
Taxonomic identifieri9365 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaInsectivoraErinaceidaeErinaceinaeErinaceus
Proteomesi
  • UP000079721 Componenti: Genome assembly

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 84PDZInterPro annotationAdd BLAST77
Domaini254 – 313LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR001478 PDZ
IPR036034 PDZ_sf
IPR001781 Znf_LIM
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A0A1S2ZIR7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPHSVTLRGP SPWGFRLVGG RDFSAPLTIS RVHAGSKAAL AALCPGDLIQ
60 70 80 90 100
AINGESTEFM THLEAQNRIK GCHDHLTLSV SRPEGRSWSS SPEDSKVQAH
110 120 130 140 150
RIHIDPDSQD GSPATSRRSS ASGIWPEDGR PSPGFPHGQS PHLPVPHNGT
160 170 180 190 200
SSEATLLTQM NNLHMSPPHS IDPARGLPRG RDCGIDLGSE VYRMLREPAE
210 220 230 240 250
PTATEPKQSG SFRYLQGILE AGEGGERPGP GGPRNLKPTA SKLGAPLTGL
260 270 280 290 300
QGLPECVRCG HGIVGTIVKA RDKLYHPECF MCSDCGLNLK QRGYFFLDER
310 320 330
LYCENHAKAR VKPPEGYDVV AVYPNAKVEL V
Length:331
Mass (Da):35,719
Last modified:April 12, 2017 - v1
Checksum:i69C0695C832FF779
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1S3W6Z0A0A1S3W6Z0_ERIEU
PDZ and LIM domain protein 4 isofor...
PDLIM4
247Annotation score:

Sequence databases

RefSeqiXP_007519992.1, XM_007519930.1

Genome annotation databases

GeneIDi103110756

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_007519992.1, XM_007519930.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi103110756

Organism-specific databases

CTDi8572

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR001478 PDZ
IPR036034 PDZ_sf
IPR001781 Znf_LIM
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1S2ZIR7_ERIEU
AccessioniPrimary (citable) accession number: A0A1S2ZIR7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: October 25, 2017
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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