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Entry version 12 (31 Jul 2019)
Sequence version 1 (12 Apr 2017)
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Protein
Submitted name:

CLIP-associated protein

Gene

CCACVL1_03868

Organism
Corchorus capsularis (Jute)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
CLIP-associated proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CCACVL1_03868Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCorchorus capsularis (Jute)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri210143 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeGrewioideaeApeibeaeCorchorus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000188268 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini3 – 223TOGInterPro annotationAdd BLAST221
Domaini281 – 512TOGInterPro annotationAdd BLAST232
Domaini744 – 994TOGInterPro annotationAdd BLAST251
Domaini1243 – 1473TOGInterPro annotationAdd BLAST231

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni551 – 572DisorderedSequence analysisAdd BLAST22
Regioni691 – 731DisorderedSequence analysisAdd BLAST41
Regioni1118 – 1137DisorderedSequence analysisAdd BLAST20

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi699 – 731PolarSequence analysisAdd BLAST33

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...
OMAi
VHTHYDS

Database of Orthologous Groups

More...
OrthoDBi
66632at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.10, 4 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR024395 CLASP_N_dom
IPR000357 HEAT
IPR034085 TOG

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12348 CLASP_N, 2 hits
PF02985 HEAT, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01349 TOG, 4 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371 SSF48371, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A1R3JWZ1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEKPLELARS KDPKDRATGA ELLHSLLQSS TRPLSSSEVA SVVSTCLDLL
60 70 80 90 100
NDPSNLKASL RALQCLASTA VLSPDYLKLH FDGVLPAVAE CLGDDKQALR
110 120 130 140 150
DAARGLLLTF MEVSSPTIIV DKAGPFTWMH DSWRVREEFL RIVTSAITVF
160 170 180 190 200
ASTEFMRAIF PHILKMLSDS TQSIREAAIL CIEEMYMQFG PKFHAELQRH
210 220 230 240 250
KLPSSVIADI NIRLKQIEPN VSSIDGLVCS TSPYEVDLVK VNQAESSPKK
260 270 280 290 300
KRSIKDISVS GGEIDVTDKP VVPVTLHSEK ELIREMEKIA SMLIVENDWS
310 320 330 340 350
VRIAAMQQVE ALVVGGAVDY PSFHALLKQL VAPLCTQLSD RRSSIVKQAC
360 370 380 390 400
HLLSFLSKEL LSDFEACAEM FIPVLFKLVV ITINVIAESA DTCIKTMLRN
410 420 430 440 450
CKVSHVLPQI VDHAKHDRSA VLRARCCEYS LLMLEYWADA PEIQRSADLY
460 470 480 490 500
EDLIKCCVAD AVSEVRSHAR RCYRMFKKSW PERSQQLFLS FDSAIQRMIN
510 520 530 540 550
DEDGGIQRRH PSPSIRGREL RKSNKAFHAP TSTNLPGVGT SLLTTMDRSR
560 570 580 590 600
PVPVGTSLSS GPFPSEVKSL GNGTERSFES VQHANKQRVP AIQNMLAGLD
610 620 630 640 650
ISEKLNFQKK QSASLDLGVD PPARGLPFPH TVTTSAVATN AIFTDSTAST
660 670 680 690 700
VKAFSSSNAG KQAFDKLGVG LMEEHSDERF ARKSGNKHID RQYIDISSKD
710 720 730 740 750
NSLRDSQGNN IPNFQRPLSR KNVSGRASGN SRGFLDDNQI LLGEMSNCVD
760 770 780 790 800
GPASLQEALT EGLSPSSNWS ARVAAFNYVR SLLQQDQKGI QEVIQNFEKV
810 820 830 840 850
MKLFFQHLDD PRHKVAHAAL SALADIIAAC RKPFESYLDR ILHHVFSRLI
860 870 880 890 900
DPKELVRKLS LMNLEVVSKA YGIDSLLPAL LRALDEQRSP KVKLAVIEYA
910 920 930 940 950
IASFKKNPMN SEGAANSGIL KLWLAKLIPL IYDKNTKLKD AAISCIISVH
960 970 980 990 1000
TDYDSTGVLN YIMCLSVEEQ NSVRRVLRQQ TPRIEMDLMN FLQNKREKPQ
1010 1020 1030 1040 1050
TRNVYEQSDV GLSPDGEYTG AFKKANYFGR YSSGSGDVDN SKKSFSTQDQ
1060 1070 1080 1090 1100
EPVQIPISQK VSSEAHEYLH QNLEGGSNNV IICNTSRNVY EQSDVGLSPD
1110 1120 1130 1140 1150
GEYTGAFKKA NYFARYSSGS SDVDSSKKSF STQDQEPVQI PISQKVSSEA
1160 1170 1180 1190 1200
HEYLHQTLED GSNNDIICNT SSSAENVESP MSHHDSADHE NTLNNNMSSS
1210 1220 1230 1240 1250
CLDMNMVTSR SHPEVSSSNI GIHPFVDVNR SYEDSMDAKF GSSLKSRISI
1260 1270 1280 1290 1300
PQILHQISNN DESATVRKQA LQQLIEASST DTNSIWTKYF NQILKVVIEV
1310 1320 1330 1340 1350
LDDPDPSTSE VTLQLVTEMV NKQKDAMENN IEIVIERLLH ATKATVSKVS
1360 1370 1380 1390 1400
IEAEKCLSII LSEYDPFRCL SAIVPLLISE DEKTLIICIK TLTKLVHRLS
1410 1420 1430 1440 1450
EEELLAQLPS FLPVLFDAFN NQSAEVRKTV VFCLVDIYVM LGKAFLPYLQ
1460 1470 1480
DLNGTQLRLV TIYANRIAQA RKGTSVEAIN CQQMEYAN
Length:1,488
Mass (Da):165,368
Last modified:April 12, 2017 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0030BDBC4712D0E7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AWWV01006894 Genomic DNA Translation: OMO99320.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
OMO99320; OMO99320; CCACVL1_03868

Gramene; a comparative resource for plants

More...
Gramenei
OMO99320; OMO99320; CCACVL1_03868

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AWWV01006894 Genomic DNA Translation: OMO99320.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblPlantsiOMO99320; OMO99320; CCACVL1_03868
GrameneiOMO99320; OMO99320; CCACVL1_03868

Phylogenomic databases

OMAiVHTHYDS
OrthoDBi66632at2759

Family and domain databases

Gene3Di1.25.10.10, 4 hits
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR024395 CLASP_N_dom
IPR000357 HEAT
IPR034085 TOG
PfamiView protein in Pfam
PF12348 CLASP_N, 2 hits
PF02985 HEAT, 1 hit
SMARTiView protein in SMART
SM01349 TOG, 4 hits
SUPFAMiSSF48371 SSF48371, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A1R3JWZ1_COCAP
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A1R3JWZ1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: July 31, 2019
This is version 12 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
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