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Protein
Submitted name:

DNA-binding WRKY

Gene

CCACVL1_13280

Organism
Corchorus capsularis (Jute)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingSAAS annotationImported
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
DNA-binding WRKYImported
Gene namesi
ORF Names:CCACVL1_13280Imported
OrganismiCorchorus capsularis (Jute)Imported
Taxonomic identifieri210143 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeGrewioideaeApeibeaeCorchorus
Proteomesi
  • UP000188268 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini244 – 310WRKYInterPro annotationAdd BLAST67

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili15 – 46Sequence analysisAdd BLAST32
Coiled coili75 – 114Sequence analysisAdd BLAST40
Coiled coili516 – 543Sequence analysisAdd BLAST28
Coiled coili710 – 741Sequence analysisAdd BLAST32
Coiled coili830 – 850Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di2.20.25.80, 1 hit
InterProiView protein in InterPro
IPR006786 Pinin_SDK_MemA
IPR003657 WRKY_dom
IPR036576 WRKY_dom_sf
PfamiView protein in Pfam
PF04696 Pinin_SDK_memA, 1 hit
PF03106 WRKY, 1 hit
SMARTiView protein in SMART
SM00774 WRKY, 1 hit
SUPFAMiSSF118290 SSF118290, 1 hit
PROSITEiView protein in PROSITE
PS50811 WRKY, 1 hit

Sequencei

Sequence statusi: Complete.

A0A1R3IBH5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVKEEKKMEI DLSLKIDAKQ QQQQKEEEKE EAKENMQEND QEEEKSAHDS
60 70 80 90 100
EDKEETAAAM AATGEVEDGT APLELSSLQE NINSEELSVL QMEMNRMKEE
110 120 130 140 150
NKVLRKVVEK TMQEFYDLQM SGRNDEKYSS QEQQAINKIP RNSKNGSPSS
160 170 180 190 200
LQDDNDEDNE LGLSLRLKTS CSPREREKDH HEDYHHHQKE ELQDKELTES
210 220 230 240 250
QEIMNQNAPI SVQNKLQQSH LSAITTQTVS PPNRKARVSV RARCQTATMN
260 270 280 290 300
DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT
310 320 330 340 350
YEGTHNHPLP VGATAMASTA SAAAASFMLV DSSNPLITSN IGALQNIPNN
360 370 380 390 400
YSNPHQNNTI NSASSSSSSH HFSNINRNMM NINDPSKGIV LDLTKTHHNF
410 420 430 440 450
ASSSTSSAHQ QQQQAFPWMP SNRSLNYGYP LPISNNAFGG SSREWKLGED
460 470 480 490 500
QDKSLAENVT AIASDPKFRV AVAAAISSLI NKETTQTHPN NPFVGREGES
510 520 530 540 550
GSTATNNWPK RNKMGSTAVE KTAEELQREI DELHRQQREI TERLRDPRGL
560 570 580 590 600
RRGGLSAGVS PRNFAANGGR GRNFPRQADR NDAEDLPPAK RRLSSAVVKV
610 620 630 640 650
EDGEIIDDAE GAKDVSDTAV EGSDAVNQTD RNLSSTRQSG WSRRDGNQRA
660 670 680 690 700
LKKDTEAPIT EHVPRILPKN EDLSLVNRNK RMLGQLLGTL ERFRKEDMQL
710 720 730 740 750
SGTEAMMRRS NSLQRAEQRA REESERLRLQ EREQIAEKRR RDLTLRARVM
760 770 780 790 800
AKAEEKKLEL LFLQWSEHHR KLSNFIRTKT EPAIYYLPKN PLPEDATMLE
810 820 830 840 850
QRKEKEFLEW KTARREELSE YQKQIGEQYV ANVEKDLERW QNARKARKAN
860 870 880 890 900
NDMNLQETMD KELDTHRLEH GPKKRKIPGG SNEDEEDVED INAGEDDMMD
910 920 930
DVLGVDDNGR RGDEAAKTEA DDTGPPPDNI DEQ
Length:933
Mass (Da):105,664
Last modified:April 12, 2017 - v1
Checksum:i6028AA529DE13948
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AWWV01010340 Genomic DNA Translation: OMO79927.1

Genome annotation databases

EnsemblPlantsiOMO79927; OMO79927; CCACVL1_13280
GrameneiOMO79927; OMO79927; CCACVL1_13280

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AWWV01010340 Genomic DNA Translation: OMO79927.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOMO79927; OMO79927; CCACVL1_13280
GrameneiOMO79927; OMO79927; CCACVL1_13280

Family and domain databases

Gene3Di2.20.25.80, 1 hit
InterProiView protein in InterPro
IPR006786 Pinin_SDK_MemA
IPR003657 WRKY_dom
IPR036576 WRKY_dom_sf
PfamiView protein in Pfam
PF04696 Pinin_SDK_memA, 1 hit
PF03106 WRKY, 1 hit
SMARTiView protein in SMART
SM00774 WRKY, 1 hit
SUPFAMiSSF118290 SSF118290, 1 hit
PROSITEiView protein in PROSITE
PS50811 WRKY, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1R3IBH5_COCAP
AccessioniPrimary (citable) accession number: A0A1R3IBH5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: November 7, 2018
This is version 11 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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