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Entry version 6 (05 Dec 2018)
Sequence version 1 (15 Feb 2017)
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Protein
Submitted name:

Pentatricopeptide repeat-containing protein, mitochondrial

Gene

LC_TR12319_c0_g1_i1_g.42857

Organism
Noccaea caerulescens (Alpine penny-cress) (Thlaspi caerulescens)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Pentatricopeptide repeat-containing protein, mitochondrialImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:LC_TR12319_c0_g1_i1_g.42857Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiNoccaea caerulescens (Alpine penny-cress) (Thlaspi caerulescens)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri107243 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeColuteocarpeaeNoccaea

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati89 – 123PPRPROSITE-ProRule annotationAdd BLAST35
Repeati124 – 153PPRPROSITE-ProRule annotationAdd BLAST30
Repeati154 – 188PPRPROSITE-ProRule annotationAdd BLAST35
Repeati189 – 219PPRPROSITE-ProRule annotationAdd BLAST31
Repeati253 – 283PPRPROSITE-ProRule annotationAdd BLAST31
Repeati299 – 329PPRPROSITE-ProRule annotationAdd BLAST31
Repeati330 – 364PPRPROSITE-ProRule annotationAdd BLAST35
Repeati365 – 391PPRPROSITE-ProRule annotationAdd BLAST27
Repeati392 – 426PPRPROSITE-ProRule annotationAdd BLAST35
Repeati461 – 491PPRPROSITE-ProRule annotationAdd BLAST31
Repeati493 – 527PPRPROSITE-ProRule annotationAdd BLAST35
Repeati528 – 563PPRPROSITE-ProRule annotationAdd BLAST36
Repeati564 – 594PPRPROSITE-ProRule annotationAdd BLAST31
Repeati630 – 664PPRPROSITE-ProRule annotationAdd BLAST35

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 7 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01535 PPR, 7 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 4 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00756 PPR, 11 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51375 PPR, 14 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Fragment.

A0A1J3EK07-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
FKASFDRRAT SECFSPSTTM SRSRGVSLIF RNAAYRPSCL QFLWANSFSS
60 70 80 90 100
SSFPSSLGIR ATNKELNQMI RSGYIGEARV IFEKLESRNT VTWNTMISGY
110 120 130 140 150
VKRREMTQAR KLFDEMTERD VVTWNAMISG YVSCGGVRFL EEARKLFDEM
160 170 180 190 200
PSRDFFTWNT MISGYAKNRR ISEALLLFER MPQRNAVSWS AMINGFCQNG
210 220 230 240 250
EVNRAVELFR RMPEKDSSSL CALVSGLIKN EKLEEAALVL AQYGRVDSGK
260 270 280 290 300
EDLVYAYNTL IVGYGQRGQV VAARRLFDQI PDLSDDDHGG EFRGRFRRNV
310 320 330 340 350
VSWNSMIKTY LKVGDVVSAR LLFDQMKDRD TISWNTMIDG YVHVSNMEEA
360 370 380 390 400
FALFSEMPDR DTHSWNMMVS GFASVGNVEL ARHYFERTPE KNTVSWNSII
410 420 430 440 450
AAYEKNKDYK EAVDVFIWMN IEGEKPDPHT LTSLLSVSTG LVNLRLGMQM
460 470 480 490 500
HQIVLKTVIP DVPIHNALIT MYSRCGYIAE SRRIFDEMKL KREVITWNAM
510 520 530 540 550
IGGYAFHDNA PESLNLFCSM KSNGIRPSHI TFVSVLNACA HAGLVDEAKR
560 570 580 590 600
QFMSMVTEYK IEPQMEHYSS LVDVICRQGL FEEAMEVIKS MPFEPDKTVW
610 620 630 640 650
GALLDACRIY NNVRLAHVAA EAMSRLEPES STPYVLLYNM YADMGLWDEA
660 670
SKVRMTMESK RIKKETGSSW VDSST
Length:675
Mass (Da):77,058
Last modified:February 15, 2017 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCBF86BE7813D2F22
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.<p><a href='/help/non_ter' target='_top'>More...</a></p>Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
GEVK01020397 Transcribed RNA Translation: JAU32435.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GEVK01020397 Transcribed RNA Translation: JAU32435.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.25.40.10, 7 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 7 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 4 hits
TIGRFAMsiTIGR00756 PPR, 11 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A1J3EK07_NOCCA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A1J3EK07
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 15, 2017
Last sequence update: February 15, 2017
Last modified: December 5, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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