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Protein
Submitted name:

Transcriptional regulator

Gene

HMPREF3014_00730

Organism
Pseudomonas sp. HMSC065H01
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi14 – 33H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulatorImported
Gene namesi
ORF Names:HMPREF3014_00730Imported
OrganismiPseudomonas sp. HMSC065H01Imported
Taxonomic identifieri1739516 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000178535 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

SMRiA0A1F0I513
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 67HTH lacI-typeInterPro annotationAdd BLAST56

Family and domain databases

CDDicd01392 HTH_LacI, 1 hit
InterProiView protein in InterPro
IPR000843 HTH_LacI
IPR010982 Lambda_DNA-bd_dom_sf
IPR001761 Peripla_BP/Lac1_sug-bd_dom
IPR028082 Peripla_BP_I
PfamiView protein in Pfam
PF00356 LacI, 1 hit
PF00532 Peripla_BP_1, 1 hit
SMARTiView protein in SMART
SM00354 HTH_LACI, 1 hit
SUPFAMiSSF47413 SSF47413, 1 hit
SSF53822 SSF53822, 1 hit
PROSITEiView protein in PROSITE
PS50932 HTH_LACI_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A1F0I513-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGSVLPSRG RVTINQVAEA AGVSKASVSR YIGGDRQLLA DATARRIERA
60 70 80 90 100
IDQLDYRPNQ MARGLKRGRT RLIGMLVADI LNPYSVAVMH GVETACREHG
110 120 130 140 150
YSLVVCNTDR DDEQERHHLA ALQSYNVEGL IVNTLGHHPG ELRALHRELP
160 170 180 190 200
MVLVDRQLAE LDTDLVGLDN ADAVEQALDH LQHRGFRDIL LVTEPLDGTS
210 220 230 240 250
SRIERVQAFN ASIGRRPALK GQVLQTDDFF RDGLRAFLSA SGPGPKALFT
260 270 280 290 300
CNGVATLCAT RQLRDLGCRL FDEVGLLALD ELDWYPLVGS GITALAQPTD
310 320 330 340
EIGRTAFERL LARLEGDREP ARRVTFPAQL IVRGSTHPRG
Length:340
Mass (Da):37,391
Last modified:February 15, 2017 - v1
Checksum:iF977BD13FCF35EF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LTTI01000179 Genomic DNA Translation: OFO80333.1
RefSeqiWP_003113738.1, NZ_KV819824.1

Similar proteinsi

Entry informationi

Entry nameiA0A1F0I513_9PSED
AccessioniPrimary (citable) accession number: A0A1F0I513
Entry historyiIntegrated into UniProtKB/TrEMBL: February 15, 2017
Last sequence update: February 15, 2017
Last modified: November 22, 2017
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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