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UniProtKB - A0A1D6F4E9 (A0A1D6F4E9_MAIZE)

Entry version 32 (12 Aug 2020)
Sequence version 1 (30 Nov 2016)
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Protein
Submitted name:

B3 domain-containing transcription repressor VAL2

Gene

100216901

Organism
Zea mays (Maize)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingARBA annotation
Biological processTranscription, Transcription regulationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
B3 domain-containing transcription repressor VAL2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:100216901Imported
ORF Names:ZEAMMB73_Zm00001d007173Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiZea mays (Maize)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri4577 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogonodae › Andropogoneae › Tripsacinae › Zea
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007305 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		A0A1D6F4E9, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		4577.GRMZM2G172621_P01

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini364 – 465TF-B3InterPro annotationAdd BLAST102
Domaini625 – 675CW-typeInterPro annotationAdd BLAST51

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni215 – 241DisorderedSequence analysisAdd BLAST27
Regioni779 – 824DisorderedSequence analysisAdd BLAST46
Regioni889 – 961DisorderedSequence analysisAdd BLAST73

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi780 – 802PolyampholyteSequence analysisAdd BLAST23
Compositional biasi806 – 824PolarSequence analysisAdd BLAST19
Compositional biasi889 – 907PolarSequence analysisAdd BLAST19

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QWC1, Eukaryota

Database of Orthologous Groups

More...OrthoDBi		186755at2759

Family and domain databases

Conserved Domains Database

More...CDDi		cd10017, B3_DNA, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.40.330.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR003340, B3_DNA-bd
IPR015300, DNA-bd_pseudobarrel_sf
IPR011124, Znf_CW

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02362, B3, 1 hit
PF07496, zf-CW, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01019, B3, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF101936, SSF101936, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50863, B3, 1 hit
PS51050, ZF_CW, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 7 potential isoforms that are computationally mapped.Show allAlign All

A0A1D6F4E9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAMAAAAAAA TKRCMNPACG APASVLGAGG DWRKGWPLRS GCFALLCDKC 
        60         70         80         90        100
GLAYEQFVFC DIFHQKESGW RDCSFCGKRL HCGCVASKNS YDLLDSGGVH 
       110        120        130        140        150
CVTCMKNSLA QSASGQVVPK LFPSPINLRF FGKSDELLSS RNFEQPPSLT 
       160        170        180        190        200
LDSRNDDIAF VNKSNHLFMV KGIEAGQSSN ILRQKEIENG SRQIKWEQPT 
       210        220        230        240        250
LSFGDMGRPF LTRSQSALES PQCTRRDDNK DPTTDSTSES FSEACLSMSL 
       260        270        280        290        300
GIANNVNRME ATSTAERPVL LSTTAIAEGR ELATTLSPFQ HAQRARHFLT 
       310        320        330        340        350
RPPRIGEGAA FDPTRDMFPH LRVARPPADG RGRNQLLPRY WPRITDQELQ 
       360        370        380        390        400
QISGDSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP 
       410        420        430        440        450
LTIQDARGKE WHFQFRFWPN NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR 
       460        470        480        490        500
IDPGGKLVMG FRKATNTVSL PDSQISAIAN GSLLSETLFS TANENIGVVS 
       510        520        530        540        550
GYPGFLHSIK GAADLHPNSL YDHHMNLVDG DVSWNKADKF GSRPDEGSLQ 
       560        570        580        590        600
FLQKRSHNIG SKSRRFLIDA EDAMELKLTW EEAQELLRPA PTAKPTVVMI 
       610        620        630        640        650
EDYEFEEYDE PPVFAKRSIF TIRATGEQDQ WIQCDDCSKW RRLPLNVIVA 
       660        670        680        690        700
PKWTCTDNSW DSKCCSCSAP EELTPRELQS VLQQYEEMRR RKGSYGLKLN 
       710        720        730        740        750
VAEMDASSLD AFATAAVFGE VGNQGSASVA TTTKHPRHRP GCTCIVCIQP 
       760        770        780        790        800
PSGKGPKHSP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEAGKKIAWV 
       810        820        830        840        850
NRDEPEGSSL SRSPQTLDST RDNSDVTATM LDKVSDVNKQ GHIDVDLNLH 
       860        870        880        890        900
PAAPAVQAAQ QQPRPVSMMG LLEVAGRPLD NYMKQNGLTS LVGEQGGGSS 
       910        920        930        940        950
STATVPPPAL VESEERTSNE GLVPSASAER EPNAMAVDEA GENQQDKAAD 
       960 
DDDDAVAAAA T
Length:961
Mass (Da):105,382
Last modified:November 30, 2016 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3A60EBD37E2F6C59
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 7 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1D6F4F4A0A1D6F4F4_MAIZE
B3 domain-containing transcription ...
100216901 ZEAMMB73_Zm00001d007173
857Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6F4F1A0A1D6F4F1_MAIZE
B3 domain-containing transcription ...
100216901 ZEAMMB73_Zm00001d007173
1,012Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6F4F0A0A1D6F4F0_MAIZE
B3 domain-containing transcription ...
100216901 ZEAMMB73_Zm00001d007173
977Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6F4F2A0A1D6F4F2_MAIZE
B3 domain-containing transcription ...
100216901 ZEAMMB73_Zm00001d007173
986Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6F4F3A0A1D6F4F3_MAIZE
B3 domain-containing transcription ...
100216901 ZEAMMB73_Zm00001d007173
895Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6F4F6A0A1D6F4F6_MAIZE
B3 domain-containing transcription ...
100216901 ZEAMMB73_Zm00001d007173
498Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6F4F5A0A1D6F4F5_MAIZE
B3 domain-containing transcription ...
100216901 ZEAMMB73_Zm00001d007173
537Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CM007648 Genomic DNA Translation: ONM26207.1

NCBI Reference Sequences

More...RefSeqi		XP_008667351.1, XM_008669129.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		Zm00001d007173_T001; Zm00001d007173_P001; Zm00001d007173

Database of genes from NCBI RefSeq genomes

More...GeneIDi		100216901

Gramene; a comparative resource for plants

More...Gramenei		Zm00001d007173_T001; Zm00001d007173_P001; Zm00001d007173

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM007648 Genomic DNA Translation: ONM26207.1
RefSeqiXP_008667351.1, XM_008669129.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi4577.GRMZM2G172621_P01

Genome annotation databases

EnsemblPlantsiZm00001d007173_T001; Zm00001d007173_P001; Zm00001d007173
GeneIDi100216901
GrameneiZm00001d007173_T001; Zm00001d007173_P001; Zm00001d007173

Phylogenomic databases

eggNOGiENOG502QWC1, Eukaryota
OrthoDBi186755at2759

Gene expression databases

ExpressionAtlasiA0A1D6F4E9, baseline and differential

Family and domain databases

CDDicd10017, B3_DNA, 1 hit
Gene3Di2.40.330.10, 1 hit
InterProiView protein in InterPro
IPR003340, B3_DNA-bd
IPR015300, DNA-bd_pseudobarrel_sf
IPR011124, Znf_CW
PfamiView protein in Pfam
PF02362, B3, 1 hit
PF07496, zf-CW, 1 hit
SMARTiView protein in SMART
SM01019, B3, 1 hit
SUPFAMiSSF101936, SSF101936, 1 hit
PROSITEiView protein in PROSITE
PS50863, B3, 1 hit
PS51050, ZF_CW, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A1D6F4E9_MAIZE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A1D6F4E9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 30, 2016
Last sequence update: November 30, 2016
Last modified: August 12, 2020
This is version 32 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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