Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Uncharacterized protein

Gene

PDLIM1

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:PDLIM1Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

ExpressionAtlasiA0A1D5NU14 baseline and differential

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini46 – 98PDZInterPro annotationAdd BLAST53
Domaini269 – 328LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00590000082980

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A1D5NU14-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNSRAARSCA PVVPPRCTGP SVLCSEGSAS TARNRPATCS ALQNAVTPGS
60 70 80 90 100
KAAIANLCIG DQIIAIDGVN TDNMTHLEAQ NKIKSCADEL TLTVSRTESK
110 120 130 140 150
VWSPLVNEEG KAHPYKMNLA SQPQEIRHIG SAHNRSAVPF TAATASAPKV
160 170 180 190 200
ITAQYNSPAG LYSSENIQTF NSAVESKTSP GPPEPSKLLD QHSHPSGSIA
210 220 230 240 250
IDRDSEVYKM LQENQESHEP PRQSASFLVL QEILESEEKG DPSKPSGFRS
260 270 280 290 300
VKAPTTKVAA SIGNAQKLPM CDKCGSGIVG VFVKIRDKQR HPECYVCSDC
310 320 330 340
GTNLKQKGHF FVEDQIYCEK HARERVVPPE GYEVVTVFPK
Length:340
Mass (Da):36,655
Last modified:November 30, 2016 - v1
Checksum:iDD72636DC98A13EA
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E1C852E1C852_CHICK
Uncharacterized protein
PDLIM1
327Annotation score:
A0A1D5NV48A0A1D5NV48_CHICK
Uncharacterized protein
PDLIM1
131Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000218 Genomic DNA No translation available.
RefSeqiXP_004942148.1, XM_004942091.2
UniGeneiGga.5362

Genome annotation databases

EnsembliENSGALT00000056793; ENSGALP00000043821; ENSGALG00000005422
GeneIDi428948
KEGGigga:428948

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000218 Genomic DNA No translation available.
RefSeqiXP_004942148.1, XM_004942091.2
UniGeneiGga.5362

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSGALT00000056793; ENSGALP00000043821; ENSGALG00000005422
GeneIDi428948
KEGGigga:428948

Organism-specific databases

CTDi9124

Phylogenomic databases

GeneTreeiENSGT00590000082980

Gene expression databases

ExpressionAtlasiA0A1D5NU14 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1D5NU14_CHICK
AccessioniPrimary (citable) accession number: A0A1D5NU14
Entry historyiIntegrated into UniProtKB/TrEMBL: November 30, 2016
Last sequence update: November 30, 2016
Last modified: October 10, 2018
This is version 16 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again