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UniProtKB - A0A1C9CJL1 (A0A1C9CJL1_ECOLX)

Entry version 22 (19 Jan 2022)
Sequence version 1 (30 Nov 2016)
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Protein
Submitted name:

Putative deoxyribonuclease RhsA

Gene

ct3C

Organism
Escherichia coli
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolaseImported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative deoxyribonuclease RhsAImported (EC:3.1.-.-Imported)
Submitted name:
Rhs core proteinImported
Submitted name:
Type IV secretion protein RhsImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ct3CImported
Synonyms:rhsA_2Imported
ORF Names:DAH22_17505Imported, EC95NR1_04796Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coliImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri562 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000298452 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000250208 Componenti: Chromosome

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini393 – 459DUF6531InterPro annotationAdd BLAST67
Domaini1493 – 1595Tox-REase-3InterPro annotationAdd BLAST103

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR045351, DUF6531
IPR008727, PAAR_motif
IPR022385, Rhs_assc_core
IPR031325, RHS_repeat
IPR028905, Tox-REase-3_dom
IPR006530, YD

Pfam protein domain database

More...Pfami		View protein in Pfam
PF20148, DUF6531, 1 hit
PF05488, PAAR_motif, 1 hit
PF05593, RHS_repeat, 6 hits
PF15647, Tox-REase-3, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR03696, Rhs_assc_core, 1 hit
TIGR01643, YD_repeat_2x, 10 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A1C9CJL1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSEGPGGPQG ATAGGTLAMR MLSQQAMVAS QMKRAANDKA IAQMLAAKKS 
        60         70         80         90        100
GPPAARLGDE IQHKSFLGAL AGAVLGAIVT IAEGCLIMAA CATGPYALVL 
       110        120        130        140        150
VPALMYASYK ASDYVEEKQN QLESWINSFC DTDGAINTGS ENVNINGKPA 
       160        170        180        190        200
ARAAVTLPPP PPPGAIPEIP QGEPSWGDIA TDLLESAAEK AVPLAKAWGN 
       210        220        230        240        250
AVITLTESNA GFMDRVSAGA SLLFPAGPVL MEFATMVGGR SEIKKDVDFP 
       260        270        280        290        300
EAGEDTALCD KENKPPRIAQ GSSNVFINNQ PAARKGDKLE CSAAIVGGSP 
       310        320        330        340        350
DVFIGGEQVT YLDIQPEFPP WQRMILGGIT IASYLLPPAG LLGKLKNLAR 
       360        370        380        390        400
LGKLGNLLGK SGKQLGAKLG ALLGKTGKSL KSIANKVIRW VTDPVVPVTG 
       410        420        430        440        450
AYCDERTDFT LGQTLPLSFT RFHSSVLPLH GLTGVGWSDS WSEYAWVREQ 
       460        470        480        490        500
GNRVDIISQG ATLNFAFDGD SDTAVNPYHA QYILRRRDDY LELFDRDALS 
       510        520        530        540        550
SRFFYDAFPG MRLRHPVTDD TSDDRLAHSP DDRMYMLGGM SDTASNRITF 
       560        570        580        590        600
ERDSQYRITG VSHTDGIRLK LTYHASGYLK AIHRTDNGIQ TLATYEQDAR 
       610        620        630        640        650
GRLTEADARL DYHLFYEYDA ADRIIRWSDN DQTWSRFTYD AQGRCVNVTG 
       660        670        680        690        700
AEGYYNATLD YGDGCTTVTD GKGTHRYYYD PDGNILREEA PDGSTTTYEW 
       710        720        730        740        750
DEFHHLLARH SPAGRVEKFE YNAALGQLSR YTAADGAEWL YRYDERGLLS 
       760        770        780        790        800
NITDPAGQTW TQQCDERGLP VSLVSPQGEE TRLAYTAQGL LSGIFRQDER 
       810        820        830        840        850
RLGIEYDHHN RPETLTDVMG REHHTEYSGH DLPVKMRGPG GQSVRLQWQQ 
       860        870        880        890        900
HHKLSGLERA ETGAEGFRYD RHGNLLAYTD GNGVVWTMEY GPFDLPVART 
       910        920        930        940        950
DGEGHRWQYR YDKDTLQLTE VINPQGESYR YILDNCGRVT EERDWGGVVW 
       960        970        980        990       1000
RYRYDADGLC TARVNGLEET ILYSRDAAGR LAEVITPEGK TQYAYDKSGR 
      1010       1020       1030       1040       1050
LTGIFSPDGT SQRTGYDERG RVNVTTQGRR AIEYHYPDEH TVIRCILPPE 
      1060       1070       1080       1090       1100
DERDRHPDES LLKTTYRYNA AGELTEVILP GDETLTFSRD EAGREVLRHS 
      1110       1120       1130       1140       1150
NRGFACEQGW NAAGQPVSQR AGFFPEETTW GGLLPSLVRE YRYDSAGNVS 
      1160       1170       1180       1190       1200
AVTSREDYGR ETRREYRLDR NGQVTAVTAS GTGLGYGEGD ESYGYDSCGY 
      1210       1220       1230       1240       1250
LKAQSAGRHR ISEETDQYAG GHRLKQAGNT QYDYDAAGRM VSRTRHRDGY 
      1260       1270       1280       1290       1300
RPETERFRWD SRDQLTGYCS AQGEQWEYRH DASGRRTEKR CDRKKIRFTY 
      1310       1320       1330       1340       1350
LWDGDSIAEI REYRDDKLYS VRHLVFNGFE LISQQFSRVR QAHPSVAPQW 
      1360       1370       1380       1390       1400
VTRTNHAVSD LTGRPLMLFN SEGKTVWRPG QTSLWGLALS LPADTGYPDP 
      1410       1420       1430       1440       1450
RGEWDPEADP GLLYAGQWQD AESGLCYNRF RYYEPETGMY LVSDPLGLQG 
      1460       1470       1480       1490       1500
GEQTYRYVPN PLGYIDPLGL AKTSVPAEKI SLSDKARDLF RQGKVREALD 
      1510       1520       1530       1540       1550
VHYEDLVRRK LGGISQEIAG REYDVVTDKI IAQVKRTYSS IDNPKNFLSK 
      1560       1570       1580       1590 
STRTQIKKTI ELAEEQGKEA QFWFKYGVSP KVREYIESKG GKVILGMGN
Length:1,599
Mass (Da):178,167
Last modified:November 30, 2016 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8EB254F268B21750
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KX118287 Genomic DNA Translation: AOM81331.1
CP021339 Genomic DNA Translation: ART23126.1
QAET01000023 Genomic DNA Translation: TGG44872.1

NCBI Reference Sequences

More...RefSeqi		WP_001289036.1, NZ_VOCY01000429.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ART23126; ART23126; EC95NR1_04796
AWS35248; AWS35248; DL800_04825
BBF46203; BBF46203; E2855_00573
BBF52119; BBF52119; E2863_00597

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|562.7394.peg.4529

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KX118287 Genomic DNA Translation: AOM81331.1
CP021339 Genomic DNA Translation: ART23126.1
QAET01000023 Genomic DNA Translation: TGG44872.1
RefSeqiWP_001289036.1, NZ_VOCY01000429.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiART23126; ART23126; EC95NR1_04796
AWS35248; AWS35248; DL800_04825
BBF46203; BBF46203; E2855_00573
BBF52119; BBF52119; E2863_00597
PATRICifig|562.7394.peg.4529

Family and domain databases

InterProiView protein in InterPro
IPR045351, DUF6531
IPR008727, PAAR_motif
IPR022385, Rhs_assc_core
IPR031325, RHS_repeat
IPR028905, Tox-REase-3_dom
IPR006530, YD
PfamiView protein in Pfam
PF20148, DUF6531, 1 hit
PF05488, PAAR_motif, 1 hit
PF05593, RHS_repeat, 6 hits
PF15647, Tox-REase-3, 1 hit
TIGRFAMsiTIGR03696, Rhs_assc_core, 1 hit
TIGR01643, YD_repeat_2x, 10 hits

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A1C9CJL1_ECOLX
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A1C9CJL1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 30, 2016
Last sequence update: November 30, 2016
Last modified: January 19, 2022
This is version 22 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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