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Protein
Submitted name:

High-mobility group box 1a

Gene

HMGB1A

Organism
Nothobranchius furzeri (Turquoise killifish)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi8 – 78HMG boxPROSITE-ProRule annotationAdd BLAST71
DNA bindingi94 – 162HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
High-mobility group box 1aImported
Gene namesi
Name:HMGB1AImported
OrganismiNothobranchius furzeri (Turquoise killifish)Imported
Taxonomic identifieri105023 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeCyprinodontiformesNothobranchiidaeNothobranchius

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 78HMG boxInterPro annotationAdd BLAST71
Domaini94 – 162HMG boxInterPro annotationAdd BLAST69

Phylogenomic databases

KOiK10802

Family and domain databases

Gene3Di1.10.30.10, 2 hits
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR017967 HMG_boxA_CS
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
PF09011 HMG_box_2, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 2 hits
SUPFAMiSSF47095 SSF47095, 2 hits
PROSITEiView protein in PROSITE
PS00353 HMG_BOX_1, 1 hit
PS50118 HMG_BOX_2, 2 hits

Sequencei

Sequence statusi: Complete.

A0A1A8VES4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKDPTKPRG KMSSYAYFVQ TCREEHKKKH PDASVNFAEF SKKCSERWKT
60 70 80 90 100
MSAKEKGKFE DLARQDKARY EREMMSYVPA RGGKKKKFKD PNAPKRPPSA
110 120 130 140 150
FFIFCSEFRP KVKGESPGLS IGDVAKKLGE MWNSTAAPDK LPYEKKASIL
160 170 180 190 200
KEKYEKAVAA YRNKGKPGAG APAKAPAPEK KDDDDDDDEE DEEEEEDDED

DDDE
Length:204
Mass (Da):23,144
Last modified:October 5, 2016 - v1
Checksum:i02EE8282A37C00F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HADY01015075 Transcribed RNA Translation: SBP53560.1
HAEJ01017904 Transcribed RNA Translation: SBS58361.1
RefSeqiXP_015817099.1, XM_015961613.1

Genome annotation databases

GeneIDi107386925
KEGGinfu:107386925

Similar proteinsi

Entry informationi

Entry nameiA0A1A8VES4_NOTFU
AccessioniPrimary (citable) accession number: A0A1A8VES4
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2016
Last sequence update: October 5, 2016
Last modified: February 28, 2018
This is version 11 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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