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Protein
Submitted name:

Lamin B2

Gene

LMNB2

Organism
Nothobranchius furzeri (Turquoise killifish)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
Lamin B2Imported
Gene namesi
Name:LMNB2Imported
OrganismiNothobranchius furzeri (Turquoise killifish)Imported
Taxonomic identifieri105023 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeCyprinodontiformesNothobranchiidaeNothobranchius

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Intermediate filamentPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini31 – 387IF rodInterPro annotationAdd BLAST357
Domaini437 – 554LTDInterPro annotationAdd BLAST118

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili35 – 69Sequence analysisAdd BLAST35
Coiled coili78 – 119Sequence analysisAdd BLAST42
Coiled coili141 – 175Sequence analysisAdd BLAST35
Coiled coili183 – 203Sequence analysisAdd BLAST21
Coiled coili242 – 262Sequence analysisAdd BLAST21
Coiled coili306 – 365Sequence analysisAdd BLAST60

Sequence similaritiesi

Belongs to the intermediate filament family.PROSITE-ProRule annotationSAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

KOiK07611

Family and domain databases

Gene3Di2.60.40.1260, 1 hit
InterProiView protein in InterPro
IPR001664 IF
IPR018039 IF_conserved
IPR039008 IF_rod_dom
IPR001322 Lamin_tail_dom
IPR036415 Lamin_tail_dom_sf
PANTHERiPTHR23239 PTHR23239, 1 hit
PfamiView protein in Pfam
PF00038 Filament, 1 hit
PF00932 LTD, 1 hit
SMARTiView protein in SMART
SM01391 Filament, 1 hit
SUPFAMiSSF74853 SSF74853, 1 hit
PROSITEiView protein in PROSITE
PS00226 IF_ROD_1, 1 hit
PS51842 IF_ROD_2, 1 hit
PS51841 LTD, 1 hit

Sequencei

Sequence statusi: Complete.

A0A1A8AYW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATANVTPSR EAGRPAASTP LSPTRISRLQ EKQDLQHLND RLAVYIDRVR
60 70 80 90 100
ALELENDRLM VKVSEKEEVT TREVTGLKAL YEAELADARR VLDETAKERA
110 120 130 140 150
RLQIALGKAQ SELEEATRSA KKKDTDLAAA LSRAIGLEGQ LNKSEAALST
160 170 180 190 200
AQSQNAALTS ELADLKSQLA KAEDGHGVAK RQLEAETLMR VDLENRCQSL
210 220 230 240 250
SEELEFRKTM FEEEMRESQH RKEQRIVEVD SGIRSDYEFK LAQALQDLRK
260 270 280 290 300
QHDEQVSVYK EELEQTFQAK LDNAKVSSEM NDKAVGAARE EVQESRMRIE
310 320 330 340 350
SLGFQLSALQ KQLASSEDRI RELEETLSAE RDAHRRSVEG KELEMAELRD
360 370 380 390 400
RMNAQLSEYQ ELLDVKLALD MEINAYRKLL EGEEHRLKLS PSPSSRVTVS
410 420 430 440 450
RTTGSSSSRT SKRKRAEAEV QAQAQEVSQM GRGEEQLMVS EESTASGAIT
460 470 480 490 500
ISPTDMDGNA VTLNNDSEQD QPLGSWRIKR QVDDEDEIIY KFSPKYVLKS
510 520 530 540 550
GRSVTVWSAD AGVTHSPPSD LLWKSQASWG TGSVIITSVT NADGEEVARR
560 570 580
SVTRTQVEIE NGEEDEEEVV QRGKVSSREC SIM
Length:583
Mass (Da):65,287
Last modified:October 5, 2016 - v1
Checksum:i1D4B0335191C9F0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HADY01021724 Transcribed RNA Translation: SBP60209.1
HAEJ01003193 Transcribed RNA Translation: SBS43650.1
RefSeqiXP_015817715.1, XM_015962229.1

Genome annotation databases

GeneIDi107387322
KEGGinfu:107387322

Similar proteinsi

Entry informationi

Entry nameiA0A1A8AYW3_NOTFU
AccessioniPrimary (citable) accession number: A0A1A8AYW3
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2016
Last sequence update: October 5, 2016
Last modified: June 20, 2018
This is version 14 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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