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Protein

Pectate lyase

Gene

AXX17_At1g30780

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Catalytic activityi

Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.UniRule annotation

Cofactori

Ca2+UniRule annotationNote: Binds 1 Ca2+ ion. Required for its activity.UniRule annotation

Pathwayi: pectin degradation

This protein is involved in step 2 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.UniRule annotation
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Putative pectinesterase/pectinesterase inhibitor 26 (PME26), Putative pectinesterase/pectinesterase inhibitor 28 (PME28), Probable pectinesterase/pectinesterase inhibitor 33 (PME33), Probable pectinesterase/pectinesterase inhibitor 40 (PME40), Probable pectinesterase/pectinesterase inhibitor 13 (PME13), Probable pectinesterase/pectinesterase inhibitor 19 (PME19), Probable pectinesterase/pectinesterase inhibitor 25 (PME25), Probable pectinesterase/pectinesterase inhibitor 34 (PME34), Probable pectinesterase/pectinesterase inhibitor 36 (PME36), Pectinesterase/pectinesterase inhibitor 3 (PME3), Probable pectinesterase/pectinesterase inhibitor 47 (PME47), Probable pectinesterase/pectinesterase inhibitor 12 (PME12), Probable pectinesterase/pectinesterase inhibitor 21 (PME21), Probable pectinesterase/pectinesterase inhibitor 60 (PME60), Probable pectinesterase 66 (PME66), Probable pectinesterase 8 (PME8), Putative pectinesterase 11 (PME11), Probable pectinesterase 15 (PME15), Putative pectinesterase/pectinesterase inhibitor 22 (PME22), Probable pectinesterase 29 (PME29), Putative pectinesterase/pectinesterase inhibitor 38 (PME38), Putative pectinesterase 14 (PME14), Pectinesterase/pectinesterase inhibitor 18 (PME18), Pectinesterase 2 (PME2), Probable pectinesterase/pectinesterase inhibitor 42 (PME42), Probable pectinesterase/pectinesterase inhibitor 64 (PME64), Probable pectinesterase 48 (PME48), Probable pectinesterase/pectinesterase inhibitor 39 (PME39), Probable pectinesterase 53 (PME53), Probable pectinesterase/pectinesterase inhibitor 54 (PME54), Probable pectinesterase 67 (PME67), Putative pectinesterase/pectinesterase inhibitor 24 (PME24), Probable pectinesterase/pectinesterase inhibitor 35 (PME35), Probable pectinesterase/pectinesterase inhibitor VGDH2 (VGDH2), Probable pectinesterase/pectinesterase inhibitor 6 (PME6), Probable pectinesterase/pectinesterase inhibitor 16 (PME16), Probable pectinesterase 50 (PME50), Probable pectinesterase 30 (PME30), Pectinesterase 31 (PME31), Probable pectinesterase/pectinesterase inhibitor 58 (PME58), Probable pectinesterase/pectinesterase inhibitor 32 (PME32), Probable pectinesterase/pectinesterase inhibitor 44 (PME44), Probable pectinesterase/pectinesterase inhibitor 46 (PME46), Probable pectinesterase/pectinesterase inhibitor 23 (PME23), Probable pectinesterase/pectinesterase inhibitor 41 (PME41), Probable pectinesterase 56 (PME56), Probable pectinesterase/pectinesterase inhibitor 59 (PME59), Probable pectinesterase/pectinesterase inhibitor 61 (PME61), Putative pectinesterase/pectinesterase inhibitor 45 (PME45), Pectinesterase 4 (PME4), Probable pectinesterase/pectinesterase inhibitor 20 (PME20), Probable pectinesterase/pectinesterase inhibitor 51 (PME51), Pectinesterase QRT1 (QRT1), Putative pectinesterase 63 (PME63), Probable pectinesterase/pectinesterase inhibitor 7 (PME7), Putative pectinesterase/pectinesterase inhibitor 43 (PME43), Putative pectinesterase 10 (PME10), Probable pectinesterase/pectinesterase inhibitor 17 (PME17), Putative pectinesterase 52 (PME52), Putative pectinesterase 57 (PME57), Pectinesterase 5 (PME5), Pectinesterase 1 (PME1), Probable pectinesterase 55 (PME55), Probable pectinesterase 68 (PME68), Probable pectinesterase 49 (PME49), Pectinesterase PPME1 (PPME1), Pectinesterase (AXX17_At3g36460), Pectinesterase (PMEPCRF), Pectinesterase (AXX17_At5g20800), Pectinesterase (At3g10720), Pectinesterase (AXX17_At5g50310), Pectinesterase (AXX17_At1g11890), Pectinesterase (AXX17_At2g42790), Pectinesterase (AXX17_At3g06710), Pectinesterase (AXX17_At3g10570), Pectinesterase (AXX17_At1g04730), Pectinesterase (AXX17_At2g44780), Pectinesterase (AXX17_At1g48300), Pectinesterase (AXX17_At2g33420), Pectinesterase (AXX17_At2g45340), Pectinesterase (AXX17_At1g24390), Pectinesterase (AXX17_At2g22270), PME26 (AXX17_At3g14890), Pectinesterase (AXX17_At1g11900), Pectinesterase (AXX17_At3g31890), Pectinesterase, Pectinesterase (AXX17_At5g45990), Pectinesterase, Pectinesterase (AXX17_At3g43380), Pectinesterase (At4g15980), Pectinesterase (AXX17_At1g01970), Pectinesterase (F14I3.7), Pectinesterase (AXX17_At5g19650), Pectinesterase (AXX17_At4g02930), Pectinesterase (AXX17_At4g02900), Pectinesterase (At3g14310), Pectinesterase (AXX17_At3g14900), Pectinesterase (AXX17_At3g53530), Pectinesterase (AXX17_At3g30550), Pectinesterase (AXX17_At1g11920), Pectinesterase (PMEPCRA), Pectinesterase (AXX17_At5g04420), Uncharacterized protein (AXX17_At5g27870), Pectinesterase (AXX17_At5g50300), Pectinesterase (AXX17_At2g44790), Pectinesterase (AXX17_At5g04430), Pectinesterase (AXX17_At4g38040), Pectinesterase (AXX17_At4g00230), Uncharacterized protein (AXX17_At5g64270), Uncharacterized protein (AXX17_At5g09310), Pectinesterase (AXX17_At2g33410), Pectinesterase (AXX17_At2g40510), Pectinesterase (AXX17_At4g02940), Pectinesterase (AXX17_At3g41380), Pectinesterase (AXX17_At4g18720), Pectinesterase (AXX17_At3g05190), Plant invertase/pectin methylesterase inhibitor superfamily (At5g09760), Pectinesterase (AXX17_At3g55110), Pectinesterase (AXX17_At2g33420), Pectinesterase (AXX17_At5g47900), Uncharacterized protein (AXX17_At3g05180), Pectinesterase (AXX17_At4g06570), Pectinesterase (At1g53840), Pectinesterase (AXX17_At4g38050), Pectinesterase (AXX17_At3g56460), Pectinesterase (PME44), Pectinesterase (At3g49220), Pectinesterase (AXX17_At3g26070), Pectinesterase (AXX17_At3g17940), Pectinesterase, Plant invertase/pectin methylesterase inhibitor superfamily (At3g49220), Pectinesterase (AXX17_At3g10560), Pectinesterase (AXX17_At5g52320), Pectinesterase (At5g20860), Pectinesterase (At5g26810), Pectinesterase (AXX17_At5g26780), Pectinesterase (AXX17_At2g22280), Pectinesterase (AXX17_At1g48290), Pectinesterase
  2. Probable pectate lyase 13 (PMR6), Putative pectate lyase 21 (At5g55720), Probable pectate lyase 3 (AT59), Putative pectate lyase 17 (At4g22090), Probable pectate lyase 18 (At4g24780), Probable pectate lyase 22 (At5g63180), Probable pectate lyase 16 (At4g22080), Probable pectate lyase 5 (At1g67750), Probable pectate lyase 1 (At1g04680), Putative pectate lyase 14 (At4g13210), Probable pectate lyase 20 (At5g48900), Putative pectate lyase 2 (At1g11920), Probable pectate lyase 6 (At2g02720), Probable pectate lyase 9 (At3g24230), Probable pectate lyase 15 (At4g13710), Probable pectate lyase 4 (At1g30350), Putative pectate lyase 11 (At3g27400), Probable pectate lyase 12 (At3g53190), Probable pectate lyase 7 (At3g01270), Probable pectate lyase 8 (At3g07010), Probable pectate lyase 10 (At3g24670), Probable pectate lyase 19 (At5g15110), Pectate lyase (At3g55140), Pectate lyase, Pectate lyase (At5g09280), Pectate lyase (F11F8_12), Pectate lyase (AXX17_At3g00310), Pectate lyase (At3g27400), Pectate lyase (AXX17_At4g25610), Pectate lyase (AXX17_At1g61710), Pectate lyase, Pectate lyase (AXX17_At5g14600), Pectate lyase (AXX17_At1g30780), Pectate lyase (AXX17_At3g47590), Pectate lyase (AXX17_At3g49720), Pectate lyase (AXX17_At1g04020), Pectate lyase (At3g01270), Pectate lyase (At3g07010), Pectate lyase (AXX17_At5g08800), Pectate lyase (At3g01270), Pectate lyase (T26I12.20), Pectate lyase (AXX17_At3g09180), Pectate lyase (AXX17_At1g15010), Pectate lyase (AXX17_At5g47570), Pectate lyase (AXX17_At3g06910), Pectate lyase, Pectate lyase (AXX17_At5g03700), Pectate lyase (AXX17_At3g26200), Pectate lyase (AXX17_At4g25600), Pectate lyase (AXX17_At4g15660), Pectate lyase (At3g07010), Pectate lyase, Pectate lyase (At3g53190), Pectate lyase (AXX17_At3g49450), Pectate lyase (AXX17_At4g28670), Pectate lyase, Pectate lyase (AXX17_At2g01680), Pectate lyase (At4g13210), Pectate lyase (AXX17_At1g12300), Pectate lyase (At3g09540), Pectate lyase (At4g13710), Pectate lyase (At5g04310), Pectate lyase (AXX17_At4g14900), Pectate lyase (AXX17_At3g29900), Pectate lyase (AXX17_At5g54880), Pectate lyase (At3g55140), Pectate lyase (At3g07010), Pectate lyase (AXX17_At3g26720), Pectate lyase (AXX17_At5g62760), Pectate lyase (At1g14420), Pectate lyase (At5g04310)
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLyaseUniRule annotation
LigandCalciumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

UniPathwayi
UPA00545;UER00824

Names & Taxonomyi

Protein namesi
Recommended name:
Pectate lyaseUniRule annotation (EC:4.2.2.2UniRule annotation)
Gene namesi
Ordered Locus Names:AXX17_At1g30780Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000078284 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 16UniRule annotationAdd BLAST16
ChainiPRO_500795005817 – 368Pectate lyaseUniRule annotationAdd BLAST352

Expressioni

Gene expression databases

ExpressionAtlasiA0A178WQL8 differential

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini109 – 292Amb_allInterPro annotationAdd BLAST184

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalUniRule annotation

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR018082 AmbAllergen
IPR002022 Pec_lyase
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF00544 Pec_lyase_C, 1 hit
PRINTSiPR00807 AMBALLERGEN
SMARTiView protein in SMART
SM00656 Amb_all, 1 hit
SUPFAMiSSF51126 SSF51126, 1 hit

Sequencei

Sequence statusi: Complete.

A0A178WQL8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASLVVIVSL LLAAFASPLL ETAHSYNVTA PRVSLNPIDA CWRRNPKWAT
60 70 80 90 100
NRQALAHCAV GYGKAAIGGK NGPIYVVTNP SDNPTRPSPG TLRYAVSQPK
110 120 130 140 150
PLWITFARDM VIVLKSQLMI NSYKTIDGRG AKVEIANGPC LRIRQVRHVI
160 170 180 190 200
IHGISIHDCK ADPNGMDGDG IRVFQSTHVW IDHCFLSRCH DGLIDVIVSS
210 220 230 240 250
TAVTISNNYF TQHDKVMLLG HDDSYMGDKD MRVTIAFNTF GPGLIERMPR
260 270 280 290 300
VRRGYAHVAN NRYEKWQMYA IGGSANPIIF SEGNYFVAPE KRSSKQVTKR
310 320 330 340 350
MMAGPDSKRW KWGTSRDVFM NGAFFGPPGV IVRPLYKGGE GFRVAHGSLV
360
PSLTSSAGPL RCYVGRIC
Length:368
Mass (Da):40,604
Last modified:September 7, 2016 - v1
Checksum:iB9F1A42C83919BFE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LUHQ01000001 Genomic DNA Translation: OAP19875.1

Similar proteinsi

Entry informationi

Entry nameiA0A178WQL8_ARATH
AccessioniPrimary (citable) accession number: A0A178WQL8
Entry historyiIntegrated into UniProtKB/TrEMBL: September 7, 2016
Last sequence update: September 7, 2016
Last modified: May 23, 2018
This is version 9 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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