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Protein

DEAD-box ATP-dependent RNA helicase CshB

Gene

cshB

Organism
Bacillus subtilis
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures.UniRule annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationImported, Hydrolase, RNA-bindingUniRule annotation
Biological processStress responseUniRule annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DEAD-box ATP-dependent RNA helicase CshBUniRule annotation (EC:3.6.4.13UniRule annotation)
Gene namesi
Name:cshBUniRule annotation
ORF Names:B4122_2410Imported, B4122_4205Imported
OrganismiBacillus subtilisImported
Taxonomic identifieri1423 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000076442 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini13 – 41Q_MOTIFInterPro annotationAdd BLAST29
Domaini44 – 217Helicase ATP-bindingInterPro annotationAdd BLAST174
Domaini244 – 387Helicase C-terminalInterPro annotationAdd BLAST144

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi13 – 41Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. CshB subfamily.UniRule annotation

Family and domain databases

CDDicd00079 HELICc, 1 hit
HAMAPiMF_01494 DEAD_helicase_CshB, 1 hit
InterProiView protein in InterPro
IPR030881 CshB
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

A0A164ZCL2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCRFKELGKM KETKFELYEL KPFIIDAVHR LGFYEPTDIQ KRLIPAVLKK
60 70 80 90 100
ESVIGQSQTG TGKTHAYLLP LLNKIDPAKD VVQVVITAPT RELANQIYQE
110 120 130 140 150
ALKITQGEEG SQIRSKCFIG GTDKQKSIDK LKIQPHLVVG TPGRIADLIK
160 170 180 190 200
EQALSVHKAE SLVIDEADLM LDMGFLADVD YIGSRMPEDL QMLVFSATIP
210 220 230 240 250
EKLKPFLKKY MENPKYAHVE PKQVTAAKIE HILIPSKHRD KDKLLFDIMS
260 270 280 290 300
HLNPYLGIVF ANTKNTADHI AQYLTGKGMK IGLLHGGLTP RERKKVMKQI
310 320 330 340 350
NDLEFTYVIA TDLAARGIDI KGVSHVINYE LPDDLDFYVH RVGRTARAGS
360 370 380 390 400
SGQAMTIYEL TDEDALVRLE KMGIEFDYLE LDKGEWKKGD DRQRRKKRKK
410 420 430 440
TPNEADEIAH RLVKKPKKVK PGYKKKMSYE MEKIKKKQRR NQSKKRK
Length:447
Mass (Da):51,079
Last modified:July 6, 2016 - v1
Checksum:i04EFBB4CF0C39C40
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LJZV01000026 Genomic DNA Translation: KZD88780.1
LJZV01000012 Genomic DNA Translation: KZD91768.1

Genome annotation databases

EnsemblBacteriaiKZD88780; KZD88780; B4122_4205
KZD91768; KZD91768; B4122_2410
PATRICifig|1423.273.peg.2390

Similar proteinsi

Entry informationi

Entry nameiA0A164ZCL2_BACIU
AccessioniPrimary (citable) accession number: A0A164ZCL2
Entry historyiIntegrated into UniProtKB/TrEMBL: July 6, 2016
Last sequence update: July 6, 2016
Last modified: October 25, 2017
This is version 10 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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