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Protein
Submitted name:

THO complex subunit 6-like protein

Gene

THOC6

Organism
Alligator mississippiensis (American alligator)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Names & Taxonomyi

Protein namesi
Submitted name:
THO complex subunit 6-like proteinImported
Gene namesi
Name:THOC6Imported
ORF Names:Y1Q_0003950Imported
OrganismiAlligator mississippiensis (American alligator)Imported
Taxonomic identifieri8496 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaCrocodyliaAlligatoridaeAlligatorinaeAlligator
Proteomesi
  • UP000050525 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini114 – 197WD_REPEATS_REGIONInterPro annotationAdd BLAST84
Repeati156 – 197WDPROSITE-ProRule annotationAdd BLAST42

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 2 hits
SMARTiView protein in SMART
SM00320 WD40, 3 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

A0A151NQJ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAPQEMDVQR ALELLHMSVF SQSVSPCGKY LAAGNSYGEI GIFSLSAALS
60 70 80 90 100
AEAKEESKKP VVCFTAHDGP VYALTSTDRQ LLSASDGELK AWNWAEIVKK
110 120 130 140 150
GCKEAWSRRP PYRSSLEVPE INSLQLNLKD NSLLLAGGDC TVHAMDLETG
160 170 180 190 200
VFTHALRGHT DYIHCLALRD QFHECLSGSE DGSVRHWDLR TGGQVQAIEV
210 220 230 240 250
HKYEECSRPQ YGKWIRCLAT DSDWMVCGGG PALTLWHLRS VTPTTVFPLA
260 270 280 290 300
PAQHHAMFYQ DLILCAGQGP TIYHLQLSGD IRARIPCSPP ALHSLCLNQR
310 320 330
SPEHKVLTAA GSSHKIDVFT NFGYRAFSLA FA
Length:332
Mass (Da):36,569
Last modified:June 8, 2016 - v1
Checksum:iF0E85B933077A8FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKHW03002391 Genomic DNA Translation: KYO39048.1
RefSeqiXP_019342814.1, XM_019487269.1

Genome annotation databases

GeneIDi102573868

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKHW03002391 Genomic DNA Translation: KYO39048.1
RefSeqiXP_019342814.1, XM_019487269.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi102573868

Organism-specific databases

CTDi79228

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 2 hits
SMARTiView protein in SMART
SM00320 WD40, 3 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A151NQJ3_ALLMI
AccessioniPrimary (citable) accession number: A0A151NQJ3
Entry historyiIntegrated into UniProtKB/TrEMBL: June 8, 2016
Last sequence update: June 8, 2016
Last modified: February 28, 2018
This is version 13 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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