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Protein

Condensin complex subunit 1

Gene

NCAPD2

Organism
Alligator mississippiensis (American alligator)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.UniRule annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Biological processi

Keywordsi

Biological processCell cycle, Cell division, DNA condensationUniRule annotation, MitosisUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Condensin complex subunit 1UniRule annotation
Gene namesi
Name:NCAPD2Imported
ORF Names:Y1Q_0002891Imported
OrganismiAlligator mississippiensis (American alligator)Imported
Taxonomic identifieri8496 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaCrocodyliaAlligatoridaeAlligatorinaeAlligator
Proteomesi
  • UP000050525 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini76 – 239Cnd1_NInterPro annotationAdd BLAST164
Domaini1069 – 1228Cnd1InterPro annotationAdd BLAST160

Sequence similaritiesi

Belongs to the CND1 (condensin subunit 1) family.UniRule annotation

Phylogenomic databases

KOiK06677

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR026971 CND1/NCAPD3
IPR032682 Cnd1_C
IPR007673 Condensin_cplx_su1
IPR024324 Condensin_cplx_su1_N
PANTHERiPTHR14222 PTHR14222, 1 hit
PTHR14222:SF2 PTHR14222:SF2, 1 hit
PfamiView protein in Pfam
PF12717 Cnd1, 1 hit
PF12922 Cnd1_N, 1 hit
PIRSFiPIRSF017127 Condensin_D2, 1 hit
SUPFAMiSSF48371 SSF48371, 6 hits

Sequencei

Sequence statusi: Complete.

A0A151MCM9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASPPGAAWE FQLPLCPGDL LRSGGSASPR LLPPAQLSGA LAAFGAAFGA
60 70 80 90 100
QGPRAVLQHF DALCSLLHHF HTVDAAIKED ALDLMKKVVS SHYNDLPSIL
110 120 130 140 150
DDPGLSSSDC LAHRNALKMN CYVLTRLVEA FETESFKRDS VELSLGGRNK
160 170 180 190 200
KGCAKRSGFS WEEERQPLIQ LLTELLQLDL RRLWSGLVVE EEFVSLMTGI
210 220 230 240 250
CYRILENPTI NHQKHRPTRE AVIHLLAVTL MRYDHMLSAT LKITQMLQHF
260 270 280 290 300
EHVAPLFGGA VSLWATEYGM KSIVGELLRE IGQKCPQNLA RDASGAKGYA
310 320 330 340 350
VFLTELAEQI PGMVLSNMSV LLHHLDGENY TMRNAILTAM AEILLQVLNG
360 370 380 390 400
DQLEEAVRST RDQFLDMLQA HVCDVLGHVR SRVLQLFTRI VQRKALPLTR
410 420 430 440 450
FQTVVCLAVG RLQDKSVMVV KNAVQLLAAF LSNNPFSCKI SCSDLAEPLK
460 470 480 490 500
KEMQKLHEMR DKHKAASALA ITPEEEWEAM QPELKAMVQQ LLHPLQGEEE
510 520 530 540 550
REVAVEVEDT AQDTAEHIIQ LLRKLNYKAA VCLTQEAVSC FQGIEPFIST
560 570 580 590 600
SELKDDKEAM ILGILKALYT GSHLKNCVPK PLNDSDNTES EDLAVVEQLA
610 620 630 640 650
SEMVKQEMLV QYLQDAYNFS VKIMEATSMV SRMMYGNSVS VVQEAIEFFV
660 670 680 690 700
TVSQFGVPQA VLGVRRMLPL IWSKELSIRE AVLSAYRRLY LSPSGDSERV
710 720 730 740 750
RAQNQVQSLS LLMVDASLGT IQCLEEIISE FVQKDEIKPS VIQLLWEQFT
760 770 780 790 800
EKSQCSSLER QAAIMLLGMM ARGKPEIVGS NLDVLVTVGL DEKVHKDYGF
810 820 830 840 850
AKEVCNAISK LAGCNKPALE KSQAPFRLPE THLLFEWLSD AVSAGFDQPS
860 870 880 890 900
TLWLPFMEAA VNLIYQLAEG PEEICAQILK DCSQKTLDGL LDLPELEASP
910 920 930 940 950
GSIPGGTNAL PTFLLTHLIS LVGHVALQQV VYLEGAVSAE LRRRRVLREE
960 970 980 990 1000
QEAKKRAASS TKEQSAKDTG NETTMEEDLG LVGASADDTE AELVRNICET
1010 1020 1030 1040 1050
ELLDEKQLFS TFMPLVLKIC NNPLVYRDPA LSAAAALALG KFCMISAEFC
1060 1070 1080 1090 1100
DSQLRLLFTM LEKSSLPGVR SNLMIVAGDL AIRFPNLIEP WTPHLYARLR
1110 1120 1130 1140 1150
DPCHDVRQIA GLVMTHLILK DMVKVKGQVS EMATLLIDPE EEIVRLAQNF
1160 1170 1180 1190 1200
FSELSSKGNA IYNLLPDIIS RLSDPDCGVD EESFHTIMRH LFSYITKDKQ
1210 1220 1230 1240 1250
AESLVEKLCQ RFRTAKTERQ FRDLSHCLML LPLSDRGLHK MQENFDCFAD
1260 1270 1280 1290 1300
KLQDPAVYRC FRATLSRLHR GGTKPETKVL IEELEQKLHA CHNRGLDSIE
1310 1320 1330 1340 1350
APGEIPGQES SQTPVPGPAK KRPVAGSQRR QPLRVANREV DSPFITPPPR
1360 1370 1380 1390 1400
MTRHHRNASK RNPSRRPAIT VSSDEENSLE EDELSAELKE DETPTKKTPI

SRASACRAR
Length:1,409
Mass (Da):157,011
Last modified:June 8, 2016 - v1
Checksum:i888EFDE2CEF2129E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKHW03006231 Genomic DNA Translation: KYO22286.1
RefSeqiXP_006258431.1, XM_006258369.3

Genome annotation databases

GeneIDi102568359
KEGGiamj:102568359

Similar proteinsi

Entry informationi

Entry nameiA0A151MCM9_ALLMI
AccessioniPrimary (citable) accession number: A0A151MCM9
Entry historyiIntegrated into UniProtKB/TrEMBL: June 8, 2016
Last sequence update: June 8, 2016
Last modified: February 28, 2018
This is version 13 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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