Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

RNA-binding protein 43 isoform B

Gene

RBM43-1

Organism
Alligator mississippiensis (American alligator)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein 43 isoform BImported
Gene namesi
Name:RBM43-1Imported
ORF Names:Y1Q_0011621Imported
OrganismiAlligator mississippiensis (American alligator)Imported
Taxonomic identifieri8496 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaCrocodyliaAlligatoridaeAlligatorinaeAlligator
Proteomesi
  • UP000050525 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 98RRMInterPro annotationAdd BLAST88

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili260 – 280Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR009909 Nmi/IFP35_dom
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034463 RBM43
IPR000504 RRM_dom
PANTHERiPTHR15225:SF8 PTHR15225:SF8, 1 hit
PfamiView protein in Pfam
PF07292 NID, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A151M0G6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAGEASKSE RTVIVSGIPD GVLKDEVMAD ILMIHFQRAK NRGGDVEGVV
60 70 80 90 100
YPTTTKGVAY ITFEDQKVTE KVLKKSEHQL EDKRLPRHYP LKVSLYSQDV
110 120 130 140 150
FSCISCVLDL SGFGDKYVLE DLVQELQKNI TALSFSPLQP NGQISVQGSF
160 170 180 190 200
PSIQSLKDNL LLKANSLSKT DKKAKCMSSQ RSNSKTQKHG VSVESKNNFI
210 220 230 240 250
HNAVGEKQVV LDTDVYYYMK HILHEDSLAK KSVVSREVTD GEITILYLEK
260 270 280 290 300
VNASSDPSKL ERAKKKIEDL SAELHSKLQK KRFHLDGSKH EMQMYQHACK
310 320 330 340 350
RVQPQYSQVL VIPYETHIDV IGSSSDIFGF AQEVKTKVKH YLQKTPQEMI

VR
Length:352
Mass (Da):39,675
Last modified:June 8, 2016 - v1
Checksum:iC4520F36EB220DA6
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A151M0I1A0A151M0I1_ALLMI
RNA-binding protein 43 isoform C
RBM43-1 Y1Q_0011621
361Annotation score:
A0A151M0M6A0A151M0M6_ALLMI
RNA-binding protein 43 isoform A
RBM43-1 Y1Q_0011621
367Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKHW03006853 Genomic DNA Translation: KYO18017.1
RefSeqiXP_014455104.1, XM_014599618.2

Genome annotation databases

GeneIDi102559089
KEGGiamj:102559089

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKHW03006853 Genomic DNA Translation: KYO18017.1
RefSeqiXP_014455104.1, XM_014599618.2

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi102559089
KEGGiamj:102559089

Organism-specific databases

CTDi375287

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR009909 Nmi/IFP35_dom
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034463 RBM43
IPR000504 RRM_dom
PANTHERiPTHR15225:SF8 PTHR15225:SF8, 1 hit
PfamiView protein in Pfam
PF07292 NID, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A151M0G6_ALLMI
AccessioniPrimary (citable) accession number: A0A151M0G6
Entry historyiIntegrated into UniProtKB/TrEMBL: June 8, 2016
Last sequence update: June 8, 2016
Last modified: February 28, 2018
This is version 14 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again