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Entry version 17 (11 Dec 2019)
Sequence version 1 (13 Apr 2016)
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Protein
Submitted name:

DIRP-like protein

Gene

Ccrd_008131

Organism
Cynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
DIRP-like proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:Ccrd_008131Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri59895 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsAsteralesAsteraceaeCarduoideaeCardueaeCarduinaeCynara
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000243975 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini201 – 249SANTInterPro annotationAdd BLAST49
Domaini842 – 943DIRPInterPro annotationAdd BLAST102

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 31DisorderedSequence analysisAdd BLAST31
Regioni167 – 194DisorderedSequence analysisAdd BLAST28
Regioni307 – 352DisorderedSequence analysisAdd BLAST46
Regioni428 – 459DisorderedSequence analysisAdd BLAST32
Regioni554 – 575DisorderedSequence analysisAdd BLAST22
Regioni654 – 673DisorderedSequence analysisAdd BLAST20

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 17PolarSequence analysisAdd BLAST17
Compositional biasi309 – 352PolyampholyteSequence analysisAdd BLAST44
Compositional biasi431 – 452PolarSequence analysisAdd BLAST22
Compositional biasi654 – 672PolarSequence analysisAdd BLAST19

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00167 SANT, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR028306 ALY_plant
IPR033471 DIRP
IPR009057 Homeobox-like_sf
IPR010561 LIN-9/ALY1
IPR001005 SANT/Myb

The PANTHER Classification System

More...
PANTHERi
PTHR21689 PTHR21689, 2 hits
PTHR21689:SF5 PTHR21689:SF5, 2 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06584 DIRP, 1 hit
PF00249 Myb_DNA-binding, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01135 DIRP, 1 hit
SM00717 SANT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46689 SSF46689, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A103XFN0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGPTRKSRSV NKRFSYSDEI SPTKDGDTTN KKNQRLLHLN SICILHLPES
60 70 80 90 100
ESQLRLQLSA ICFLCHCFES DARKQVSLLR LFLAMNPAAC LSFLSRALQL
110 120 130 140 150
EFLEHKCCDN GNELRSGWWF TTMTVVTDTM VLFSQIGTQP GLHLQLGCAY
160 170 180 190 200
CVCNVCPNNW YQSFRGPEDT HDSGSTESDF QNNDESEDVQ EDTKKKLSDM
210 220 230 240 250
LGSHWSKDEL EHFYEAYRKH GRDWRKVAAV LRNRTAEMVE AVYSLNKAYL
260 270 280 290 300
SLPEGTASVV GFIAMMTDYY SNMTTMRSPK AARCAVVAGR NPSPEAAVSM
310 320 330 340 350
VDLAGTSVSE EGDSEHERND GVETSRKPQK RLQRKVHETT SKGSVERFRS
360 370 380 390 400
HPDAVPSDYG CLSLLKKKRS GGSRPRAVGK RTPRFPVSHA YENIKGEKYF
410 420 430 440 450
LQTRKGLKLR ADNDDDVAHS IALALTEASK RGGSPQVSQT PNRRSDSLMS
460 470 480 490 500
SPCRSAERMY DESDVASGWF VDNDTYDDDI EGSMEADNTD FSRDKSKERT
510 520 530 540 550
NAGYMLHDRK GSQVKKVRVD RKENKHLEYI REACSGTEGQ NLGTLRRNFD
560 570 580 590 600
VEVADAKPSR PSSQGSKRRS KEAHTGRAIN YLDSFRADET SAFDALETLA
610 620 630 640 650
NLSLMILPEA NEAAKEGKVE HVDDSHLLLP MPASRHKEKR KSLALSSNGY
660 670 680 690 700
QSISRLESAD NKPQTSAKDL VDDTNVASEA KESHQLITKV SRKRQKIVAP
710 720 730 740 750
KISKAEAPID STPIESLEAE ATHAAQMPLN KHISQSSSPQ LVKHSQHVCS
760 770 780 790 800
TNHSKRDVRN SALSDVHVSE MNPSNIRTKV RSKRKMNKPE ALEAAKFSDV
810 820 830 840 850
VGTDKSSVHL PSLSHRTDKL KGKLSNSLSN QLMRRWCAFE WFYSAIDDPW
860 870 880 890 900
FAKREFVEYL YHVGLGHVPR LTRVEWGVIR SSLGKPRRFS RQFLKEEKDK
910 920 930 940 950
LNQYRDSVRT HYTELRSGSR DGLPTDLARP LSVGQCVIAI YPRTREIHDG
960 970 980 990 1000
TVLTVDNNRC CVQFDRPELG VEKIMDTDCM PLNPFENMPA SLMRRTPVDK
1010 1020 1030 1040 1050
FFESLKEAQM NGLGRDQRLE GYTKCSSHEK LENMDEVASV KSDLQSRYGP
1060 1070 1080 1090 1100
RDFASNHHAA YTMPGTLAQI QAKELDVEAI AELTRALDKK EAVVFELRRM
1110 1120 1130 1140 1150
NDDVLENQTD GDFSLQDSDA FKKQYAAVLV QLNEANAQAR VSSALYRLRQ
1160 1170 1180 1190 1200
RNTYQRNLHL ASWPRAVGDL SDHGAISSSS DHTTNRTEES ECHVNEIVEM
1210 1220 1230 1240 1250
SRTRARTMVD IAIQAMSSLK LNPTVEIDKA VDYVSDRIPS DESGIPPARP
1260 1270 1280 1290 1300
IASDPVPPSL SLHEQLVSTK CTERQFPPAE VASILDSAVS SLQPCSPQNL
1310 1320
QVYAEIQKCM GIIKNQILAL VPT
Length:1,323
Mass (Da):148,514
Last modified:April 13, 2016 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC3BCAB06C90C4F6F
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
LEKV01005129 Genomic DNA Translation: KVH89870.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
KVH89870; KVH89870; Ccrd_008131

Gramene; a comparative resource for plants

More...
Gramenei
KVH89870; KVH89870; Ccrd_008131

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LEKV01005129 Genomic DNA Translation: KVH89870.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblPlantsiKVH89870; KVH89870; Ccrd_008131
GrameneiKVH89870; KVH89870; Ccrd_008131

Family and domain databases

CDDicd00167 SANT, 1 hit
InterProiView protein in InterPro
IPR028306 ALY_plant
IPR033471 DIRP
IPR009057 Homeobox-like_sf
IPR010561 LIN-9/ALY1
IPR001005 SANT/Myb
PANTHERiPTHR21689 PTHR21689, 2 hits
PTHR21689:SF5 PTHR21689:SF5, 2 hits
PfamiView protein in Pfam
PF06584 DIRP, 1 hit
PF00249 Myb_DNA-binding, 1 hit
SMARTiView protein in SMART
SM01135 DIRP, 1 hit
SM00717 SANT, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A103XFN0_CYNCS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A103XFN0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 13, 2016
Last sequence update: April 13, 2016
Last modified: December 11, 2019
This is version 17 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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