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Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Mycobacterium sp. IS-1742
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi30 – 37ATPUniRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation
Biological processDNA damage, DNA repairUniRule annotationSAAS annotation, DNA replicationUniRule annotationSAAS annotation, SOS responseUniRule annotationSAAS annotation
LigandATP-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA replication and repair protein RecFUniRule annotationSAAS annotation
Gene namesi
Name:recFUniRule annotation
ORF Names:AU196_10410Imported
OrganismiMycobacterium sp. IS-1742Imported
Taxonomic identifieri1772285 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
Proteomesi
  • UP000054128 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 352SMC_NInterPro annotationAdd BLAST350

Sequence similaritiesi

Belongs to the RecF family.UniRule annotationSAAS annotation

Family and domain databases

HAMAPiMF_00365 RecF, 1 hit
InterProiView protein in InterPro
IPR001238 DNA-binding_RecF
IPR018078 DNA-binding_RecF_CS
IPR027417 P-loop_NTPase
IPR003395 RecF/RecN/SMC_N
PANTHERiPTHR32182:SF0 PTHR32182:SF0, 1 hit
PfamiView protein in Pfam
PF02463 SMC_N, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00611 recf, 1 hit
PROSITEiView protein in PROSITE
PS00617 RECF_1, 1 hit
PS00618 RECF_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A101AZ76-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFVRHLTLTD FRSWARADLE LESGRTVFVG PNGFGKTNLV EALWYSATLG
60 70 80 90 100
SHRVASDAPL IRAGAPRAVV STIVVNEGRE LAVDLEITTG RANKARLNRS
110 120 130 140 150
PVRSPREVLG VLRAVLFAPE DLALVRGDPG ERRRYLDELA TTRRPAIAGV
160 170 180 190 200
RADYDRVIRQ RTALLKSAAA ARYRGDRSVL DTLDVWDGHL AAHGALLMAA
210 220 230 240 250
RADLVHHLAP EVEKAYQLLA PGSRPAAIRY RTSVDADDVD ADVSAEYYEA
260 270 280 290 300
ALLDAMARRR DAELERGVCL VGPHRDDLEL RLGDQLAKGY ASHGESWSMA
310 320 330 340 350
LSMRLAAYEL LRTDGSDPVL LLDDVFAELD AARRRALAEV AASAEQVLVT
360 370 380
AAVAEDIPAD WDARRIMIRM QDDDDGRVSM VDG
Length:383
Mass (Da):42,009
Last modified:April 13, 2016 - v1
Checksum:iAAA14779F6EC5F77
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LQIV01000005 Genomic DNA Translation: KUI31672.1
RefSeqiWP_059093988.1, NZ_LQIV01000005.1

Genome annotation databases

EnsemblBacteriaiKUI31672; KUI31672; AU196_10410

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LQIV01000005 Genomic DNA Translation: KUI31672.1
RefSeqiWP_059093988.1, NZ_LQIV01000005.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiKUI31672; KUI31672; AU196_10410

Family and domain databases

HAMAPiMF_00365 RecF, 1 hit
InterProiView protein in InterPro
IPR001238 DNA-binding_RecF
IPR018078 DNA-binding_RecF_CS
IPR027417 P-loop_NTPase
IPR003395 RecF/RecN/SMC_N
PANTHERiPTHR32182:SF0 PTHR32182:SF0, 1 hit
PfamiView protein in Pfam
PF02463 SMC_N, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00611 recf, 1 hit
PROSITEiView protein in PROSITE
PS00617 RECF_1, 1 hit
PS00618 RECF_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A101AZ76_9MYCO
AccessioniPrimary (citable) accession number: A0A101AZ76
Entry historyiIntegrated into UniProtKB/TrEMBL: April 13, 2016
Last sequence update: April 13, 2016
Last modified: November 7, 2018
This is version 15 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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