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Protein

Protein translocase subunit SecD

Gene

secD

Organism
Idiomarina sp. H105
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transport, TranslocationUniRule annotationSAAS annotation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Protein translocase subunit SecDUniRule annotation
Gene namesi
Name:secDUniRule annotationImported
ORF Names:AUR68_25840Imported
OrganismiIdiomarina sp. H105Imported
Taxonomic identifieri1766622 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesIdiomarinaceaeIdiomarina
Proteomesi
  • UP000054149 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cell membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei7 – 25HelicalUniRule annotationAdd BLAST19
Transmembranei456 – 473HelicalUniRule annotationAdd BLAST18
Transmembranei480 – 502HelicalUniRule annotationAdd BLAST23
Transmembranei508 – 530HelicalUniRule annotationAdd BLAST23
Transmembranei551 – 573HelicalUniRule annotationAdd BLAST23
Transmembranei579 – 603HelicalUniRule annotationAdd BLAST25

GO - Cellular componenti

Keywords - Cellular componenti

Cell membraneUniRule annotationSAAS annotation, Membrane

Interactioni

Subunit structurei

Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.UniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 103SecD-TM1InterPro annotationAdd BLAST102

Sequence similaritiesi

Belongs to the SecD/SecF family. SecD subfamily.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotationSAAS annotation

Family and domain databases

HAMAPiMF_01463_B SecD_B, 1 hit
InterProiView protein in InterPro
IPR005791 SecD
IPR027398 SecD-TM
IPR022813 SecD/SecF_arch_bac
IPR022645 SecD/SecF_bac
IPR022646 SecD/SecF_CS
PfamiView protein in Pfam
PF07549 Sec_GG, 1 hit
PF13721 SecD-TM1, 1 hit
PF02355 SecD_SecF, 1 hit
TIGRFAMsiTIGR00916 2A0604s01, 1 hit
TIGR01129 secD, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0W1S947-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNRYPLWKY LLILVVLVVG LIYSLPNLFP ADPAIQVSDA QGNALDERQI
60 70 80 90 100
TRVEEALSER DIAVKAVEEN NGQWLIRLQS DDDQLDARDI AAEVLGPNAT
110 120 130 140 150
VALNLADATP GWLQAFSASP MTLGLDLRGG VHFLLEVDMD AALAQRLEVN
160 170 180 190 200
ASAMRELLRS ERIRYRNTTI DGRSLSIDFA SSEDRDAARR LISRDFPNFE
210 220 230 240 250
YTSEGDGRTS RLVMTLSDMA VNEIQDYAIN QNLTTLRNRV NELGVAEPMV
260 270 280 290 300
QRQGPSQIVV ELPGVQDTVA AKRIVGATAN LEFRLEARHD TPDAETERFE
310 320 330 340 350
FRNDPARSAE LMRDVIITGD SVSSASNSFD ENGRPQVNIN LDGTGGTLMN
360 370 380 390 400
RATRTNIGRN MAVLFIEHKS EDRIEVDPET GEETIVREPY TERGLISLAT
410 420 430 440 450
IQSALGNSFR ITGLDSPTEA AELALLLRSG SLAAPIYFVQ ERTIGPSLGA
460 470 480 490 500
ENIERGLLSV QIGLLLVVLF MLVRYKVFGV FANIALALNL TLLVAVMSML
510 520 530 540 550
GATLTLPGIA GIVLTLGMAV DANVLIFERI REELRNGMSI QQAIYAGYER
560 570 580 590 600
AFTSIVDANI TTLLVAVILF SIGTGPVKGF AVTLSIGILT SMFTALLVTR
610
AMVNLAYGGK HVKKLWI
Length:617
Mass (Da):67,520
Last modified:March 16, 2016 - v1
Checksum:i3F35313A993259D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LOPZ01000224 Genomic DNA Translation: KTG22627.1

Genome annotation databases

EnsemblBacteriaiKTG22627; KTG22627; AUR68_25840

Similar proteinsi

Entry informationi

Entry nameiA0A0W1S947_9GAMM
AccessioniPrimary (citable) accession number: A0A0W1S947
Entry historyiIntegrated into UniProtKB/TrEMBL: March 16, 2016
Last sequence update: March 16, 2016
Last modified: July 18, 2018
This is version 13 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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