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Protein

tRNA pseudouridine synthase D

Gene

truD

Organism
Yersinia frederiksenii
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.UniRule annotationSAAS annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei27SubstrateUniRule annotation1
Active sitei80NucleophileUniRule annotation1
Binding sitei129SubstrateUniRule annotation1
Binding sitei329SubstrateUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotationImported
Biological processtRNA processingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase DUniRule annotationSAAS annotation (EC:5.4.99.27UniRule annotation)
Alternative name(s):
tRNA pseudouridine(13) synthaseUniRule annotation
tRNA pseudouridylate synthase DUniRule annotation
tRNA-uridine isomerase DUniRule annotation
Gene namesi
Name:truDUniRule annotationImported
ORF Names:ERS008521_01589Imported
OrganismiYersinia frederikseniiImported
Taxonomic identifieri29484 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia
Proteomesi
  • UP000044703 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini155 – 303TRUDInterPro annotationAdd BLAST149

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.UniRule annotation

Family and domain databases

HAMAPiMF_01082. TruD. 1 hit.
InterProiView protein in InterPro
IPR020103. PsdUridine_synth_cat_dom_sf.
IPR001656. PsdUridine_synth_TruD.
IPR020119. PsdUridine_synth_TruD_CS.
IPR011760. PsdUridine_synth_TruD_insert.
PANTHERiPTHR13326. PTHR13326. 3 hits.
PfamiView protein in Pfam
PF01142. TruD. 2 hits.
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00094. tRNA_TruD_broad. 1 hit.
PROSITEiView protein in PROSITE
PS50984. TRUD. 1 hit.
PS01268. UPF0024. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0T9TVI3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMDMENLTWL HGKPKASGIL KANPEDFVVV EDLGFEPDGE GEHLLVRIRK
60 70 80 90 100
NGCNTQFVAD YLARFAKIHP RLVSYAGLKD RHAVTEQWFC LHLPGKEAPD
110 120 130 140 150
LSTFELEGCE VLESVRQKRK LRIGSLKGNA FTLVLRHITD NQDVEQRLQQ
160 170 180 190 200
IAAQGVPNYF GSQRFGRGGN NLVQARLWAN NEIRVKERSK RSFYLSASRS
210 220 230 240 250
AMFNLISSCR LAQQQATTVL AGDALQLSGR GSWFVAEAEE LTTLQQRVDA
260 270 280 290 300
GELNVTAPLP GDGELGTQGE ALAFEQACLA EQTELLALIK RERVEGARRA
310 320 330 340 350
ILLKPQNMAW NWWDEVTLEL SFWLPAGSFA TSVVREIMNQ DNADAADIAE
Length:350
Mass (Da):39,095
Last modified:February 17, 2016 - v1
Checksum:iD32CD90EEC661847
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CQEP01000003 Genomic DNA. Translation: CNL04458.1.

Genome annotation databases

EnsemblBacteriaiCNL04458; CNL04458; ERS008521_01589.

Similar proteinsi

Entry informationi

Entry nameiA0A0T9TVI3_YERFR
AccessioniPrimary (citable) accession number: A0A0T9TVI3
Entry historyiIntegrated into UniProtKB/TrEMBL: February 17, 2016
Last sequence update: February 17, 2016
Last modified: November 22, 2017
This is version 12 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported