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Protein

tRNA pseudouridine synthase D

Gene

truD

Organism
Yersinia kristensenii
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.UniRule annotationSAAS annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei26SubstrateUniRule annotation1
Active sitei79NucleophileUniRule annotation1
Binding sitei128SubstrateUniRule annotation1
Binding sitei328SubstrateUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotationImported
Biological processtRNA processingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase DUniRule annotationSAAS annotation (EC:5.4.99.27UniRule annotation)
Alternative name(s):
tRNA pseudouridine(13) synthaseUniRule annotation
tRNA pseudouridylate synthase DUniRule annotation
tRNA-uridine isomerase DUniRule annotation
Gene namesi
Name:truDUniRule annotationImported
ORF Names:ERS008491_02780Imported
OrganismiYersinia kristenseniiImported
Taxonomic identifieri28152 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia
Proteomesi
  • UP000045824 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini154 – 302TRUDInterPro annotationAdd BLAST149

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.UniRule annotation

Family and domain databases

HAMAPiMF_01082. TruD. 1 hit.
InterProiView protein in InterPro
IPR020103. PsdUridine_synth_cat_dom_sf.
IPR001656. PsdUridine_synth_TruD.
IPR020119. PsdUridine_synth_TruD_CS.
IPR011760. PsdUridine_synth_TruD_insert.
PANTHERiPTHR13326. PTHR13326. 3 hits.
PfamiView protein in Pfam
PF01142. TruD. 2 hits.
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00094. tRNA_TruD_broad. 1 hit.
PROSITEiView protein in PROSITE
PS50984. TRUD. 1 hit.
PS01268. UPF0024. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0T9LJ52-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDMDNLTWLH GKPKANGVLK ANPEDFVVVE DLGFEPDGEG EHLLVRIRKN
60 70 80 90 100
GCNTQFVADY LARFAKIHPR LVSYAGLKDR HAVTEQWFCL HLPGKEAPDL
110 120 130 140 150
ATFELEGCEV LESVRQKRKL RIGSLKGNAF TLVLRHITDN QDVEQRLQQI
160 170 180 190 200
AVHGVPNYFG SQRFGRGGNN LVQARLWANN EIRVKERSKR SFYLSASRSA
210 220 230 240 250
MFNLISSSRL AQQQATTVLE GDALQLSGRG SWFVAGADEL PLLQQRVDAG
260 270 280 290 300
ELNVTAPLPG DGELGTQGAA LVFEQASLAD QTELLALIKR ERVEGARRAI
310 320 330 340
LLKPQNMTWN WWDEVTLELN FWLPAGSFAT SVVREIMNQD NADAADIAE
Length:349
Mass (Da):38,945
Last modified:February 17, 2016 - v1
Checksum:i54414D96EF03563A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CPYI01000011 Genomic DNA. Translation: CNE99205.1.
RefSeqiWP_050119765.1. NZ_PGWV01000011.1.

Genome annotation databases

EnsemblBacteriaiCNE99205; CNE99205; ERS008491_02780.

Similar proteinsi

Entry informationi

Entry nameiA0A0T9LJ52_YERKR
AccessioniPrimary (citable) accession number: A0A0T9LJ52
Entry historyiIntegrated into UniProtKB/TrEMBL: February 17, 2016
Last sequence update: February 17, 2016
Last modified: March 28, 2018
This is version 15 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported