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Protein
Submitted name:

Si:ch73-158p21.3

Gene

si:ch73-158p21.3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-DRE-2132295 MHC class II antigen presentation

Names & Taxonomyi

Protein namesi
Submitted name:
Si:ch73-158p21.3Imported
Gene namesi
Name:si:ch73-158p21.3Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 4

Organism-specific databases

ZFINiZDB-GENE-030131-4747 si:ch73-158p21.3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_501534135420 – 245Sequence analysisAdd BLAST226

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000071675

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

GeneTreeiENSGT00900000140849
OMAiGETISCM
PhylomeDBiA0A0R4IVW9

Family and domain databases

Gene3Di2.60.40.10, 1 hit
3.10.320.10, 1 hit
InterProiView protein in InterPro
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003597 Ig_C1-set
IPR011162 MHC_I/II-like_Ag-recog
IPR014745 MHC_II_a/b_N
IPR000353 MHC_II_b_N
PfamiView protein in Pfam
PF07654 C1-set, 1 hit
PF00969 MHC_II_beta, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD000328 MHC_II_b_N, 1 hit
SMARTiView protein in SMART
SM00407 IGc1, 1 hit
SM00921 MHC_II_beta, 1 hit
SUPFAMiSSF48726 SSF48726, 1 hit
SSF54452 SSF54452, 1 hit
PROSITEiView protein in PROSITE
PS50835 IG_LIKE, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.iShow all

A0A0R4IVW9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSPANLLLML SVFTGAADGY YFSTWSQCIY SYPDLSDMVF ILSFNFNKWM
60 70 80 90 100
FLQFNSTVGI FVGYTEQGVK FAENFNKNEA YLQQLRAEVD IFCRHNAEIY
110 120 130 140 150
ESAVFDKAVM PKVNLSLVQK GDSRHPYLLR CSAYDFYPQQ IKMSWLRDGR
160 170 180 190 200
VVSDVTSSEQ MPNGDWYYQS HSELVFSPKS GETISCMVEH SSLTGPVVID
210 220 230 240
WKPPVHEFEW DFQLLSAAGD ASAVLGIIIA TAGYIYYKTK TGLEI
Length:245
Mass (Da):27,871
Last modified:June 20, 2018 - v2
Checksum:i2D3D23F59CC32CCF
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1L1QZR0A0A1L1QZR0_DANRE
Si:ch73-158p21.3
si:ch73-158p21.3
249Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP074874 Genomic DNA No translation available.
UniGeneiDr.132659
Dr.79881

Genome annotation databases

EnsembliENSDART00000168831; ENSDARP00000138504; ENSDARG00000101030

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP074874 Genomic DNA No translation available.
UniGeneiDr.132659
Dr.79881

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000071675

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000168831; ENSDARP00000138504; ENSDARG00000101030

Organism-specific databases

ZFINiZDB-GENE-030131-4747 si:ch73-158p21.3

Phylogenomic databases

GeneTreeiENSGT00900000140849
OMAiGETISCM
PhylomeDBiA0A0R4IVW9

Enzyme and pathway databases

ReactomeiR-DRE-2132295 MHC class II antigen presentation

Family and domain databases

Gene3Di2.60.40.10, 1 hit
3.10.320.10, 1 hit
InterProiView protein in InterPro
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003597 Ig_C1-set
IPR011162 MHC_I/II-like_Ag-recog
IPR014745 MHC_II_a/b_N
IPR000353 MHC_II_b_N
PfamiView protein in Pfam
PF07654 C1-set, 1 hit
PF00969 MHC_II_beta, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD000328 MHC_II_b_N, 1 hit
SMARTiView protein in SMART
SM00407 IGc1, 1 hit
SM00921 MHC_II_beta, 1 hit
SUPFAMiSSF48726 SSF48726, 1 hit
SSF54452 SSF54452, 1 hit
PROSITEiView protein in PROSITE
PS50835 IG_LIKE, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A0R4IVW9_DANRE
AccessioniPrimary (citable) accession number: A0A0R4IVW9
Entry historyiIntegrated into UniProtKB/TrEMBL: January 20, 2016
Last sequence update: June 20, 2018
Last modified: July 18, 2018
This is version 24 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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