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Entry version 29 (11 Dec 2019)
Sequence version 1 (20 Jan 2016)
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Protein
Submitted name:

Os06g0638000 protein

Gene

Os06g0638000

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri1831 – 1860C3H1-typePROSITE-ProRule annotationAdd BLAST30
Zinc fingeri1864 – 1885C3H1-typePROSITE-ProRule annotationAdd BLAST22
Zinc fingeri1886 – 1912C3H1-typePROSITE-ProRule annotationAdd BLAST27
Zinc fingeri1913 – 1940C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri1941 – 1963C3H1-typePROSITE-ProRule annotationAdd BLAST23

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Os06g0638000 proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Os06g0638000Imported
ORF Names:OSNPB_060638000Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 6

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A0A0P0WZ32

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
4530.OS06T0638000-00

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A0A0P0WZ32

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1831 – 1860C3H1-typeInterPro annotationAdd BLAST30
Domaini1864 – 1885C3H1-typeInterPro annotationAdd BLAST22
Domaini1886 – 1912C3H1-typeInterPro annotationAdd BLAST27
Domaini1913 – 1940C3H1-typeInterPro annotationAdd BLAST28
Domaini1941 – 1963C3H1-typeInterPro annotationAdd BLAST23

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 238DisorderedSequence analysisAdd BLAST238
Regioni307 – 328DisorderedSequence analysisAdd BLAST22
Regioni348 – 371DisorderedSequence analysisAdd BLAST24
Regioni493 – 556DisorderedSequence analysisAdd BLAST64
Regioni730 – 755DisorderedSequence analysisAdd BLAST26
Regioni813 – 866DisorderedSequence analysisAdd BLAST54
Regioni1283 – 1304DisorderedSequence analysisAdd BLAST22
Regioni1337 – 1524DisorderedSequence analysisAdd BLAST188
Regioni1577 – 1596DisorderedSequence analysisAdd BLAST20
Regioni1744 – 1790DisorderedSequence analysisAdd BLAST47

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi58 – 85BasicSequence analysisAdd BLAST28
Compositional biasi86 – 129Pro-richSequence analysisAdd BLAST44
Compositional biasi135 – 154PolyampholyteSequence analysisAdd BLAST20
Compositional biasi495 – 520PolarSequence analysisAdd BLAST26
Compositional biasi829 – 852PolarSequence analysisAdd BLAST24
Compositional biasi1337 – 1353PolarSequence analysisAdd BLAST17
Compositional biasi1361 – 1379PolarSequence analysisAdd BLAST19
Compositional biasi1398 – 1432PolarSequence analysisAdd BLAST35
Compositional biasi1466 – 1485PolarSequence analysisAdd BLAST20
Compositional biasi1500 – 1518PolarSequence analysisAdd BLAST19
Compositional biasi1577 – 1591PolarSequence analysisAdd BLAST15
Compositional biasi1744 – 1765PolyampholyteSequence analysisAdd BLAST22
Compositional biasi1766 – 1790PolarSequence analysisAdd BLAST25

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri1831 – 1860C3H1-typePROSITE-ProRule annotationAdd BLAST30
Zinc fingeri1864 – 1885C3H1-typePROSITE-ProRule annotationAdd BLAST22
Zinc fingeri1886 – 1912C3H1-typePROSITE-ProRule annotationAdd BLAST27
Zinc fingeri1913 – 1940C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri1941 – 1963C3H1-typePROSITE-ProRule annotationAdd BLAST23

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...
OMAi
HRGNIAS

Database of Orthologous Groups

More...
OrthoDBi
142633at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000571 Znf_CCCH

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00356 ZnF_C3H1, 5 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50103 ZF_C3H1, 5 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0P0WZ32-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGYE
60 70 80 90 100
SHSHHQYHLP DHHHHHHHHH PPPRVQHHHH HHHQQLPAPT PPPPPPPPLP
110 120 130 140 150
QHRLEPPPPH YGFPPRGHPD AYSPPPYHDP SPHHHYHRHG GDDFLPADEI
160 170 180 190 200
RRVGGGHHHH HHHPQLQQLL PWEEAEEERR RYGGATQQLR LSPSGPRKRQ
210 220 230 240 250
RCAVHDADVE STSSSGPPPR RQRQQPHPDY ALDDSFVDRN NAHPGYMVHE
260 270 280 290 300
GFSIHSDSKV SRKIQMPTQM ALPGSPHGTS AGYARRAPQK VAPSRVSVWH
310 320 330 340 350
RIEENPAMYE PSSPPPHMPK EVHVSPCKSN NVAPASKELA SVISVDCRGK
360 370 380 390 400
SADGNDGDSN TGTKKNPVKK NEKVLASVLV KPPMEPKEKE VAAKKMLKKP
410 420 430 440 450
DKVQKNAVHS NIRSLVSTPC PGAGAKKVKK IVIKKIVRKI NGKGNQNSTP
460 470 480 490 500
VVSEKRDGID ANACEKEEGE ITTSSFEKDV ISAHDPIAVS DTAGFGNAVN
510 520 530 540 550
DQKQKNTDFT NPSGRNAASA NGSMEIPDPP NGSGSAHPGK EEVLSPKNPV
560 570 580 590 600
DNSNASLVVE PIEVLEKSGT EHPRKEHDMS SIGSGVNDAF ADANNHTQKE
610 620 630 640 650
VGEMNVAVAI NSVRVSDARE VPRCDDSSME ESKVPKDVDA NIAVCMDGVA
660 670 680 690 700
SNCDTTEVCG NEDARRECGK KLIGINDEKA FLLNNSARSS STSDTCMTAV
710 720 730 740 750
EGAQKKEGII LTGSSEKSIG FLGDSVGTHR TTEFGASKDA PNEGDDMPSH
760 770 780 790 800
PSEKDFMSLN SCGGLNYTEV SEKEDIQEKE DRVPMESIVA CTSSGNEDIQ
810 820 830 840 850
VNEGRKPMEL SEANAFSGSG DSQGKECRIP MGSSETNTSS VNHVNASNEK
860 870 880 890 900
DFSLSEDTQK KESHRPIESC ENTTFEIMHH EEAPSTEEVI TGVSLGRKVA
910 920 930 940 950
EGPTRSNERC SGARGNSATT LKFGLACATE DNQMEDLLNN RTALNETDDP
960 970 980 990 1000
LDAEDSPVFV PPSSRNVEST YASPLYDPME DSTSDGILNI GLGRNTTSKA
1010 1020 1030 1040 1050
AELLDLHRDH ISSENDSLIH SRGTSSVSGN REQSVPTALT LGSNIYFSSA
1060 1070 1080 1090 1100
ETDDRPEERH ELVVEGQQGL TVETTSKLDS PGKIEVLNGA GFISTGIQNW
1110 1120 1130 1140 1150
LSLPPSINSM EMSGQFLNNG FTVSKGRLGL DQSMDDATSV SQDHDIAQDM
1160 1170 1180 1190 1200
DQRGSEDAFF SQDHSIRLCG SNLPHSHLLA PKESSMNGED QSGIVLTGLH
1210 1220 1230 1240 1250
PSSSVNVLGH YGYQTDDIPV DNLNKLPSAL ESSDAMDADQ VSSQVCVNPD
1260 1270 1280 1290 1300
HTNDSNTENA GVESNAKQDL LSSWIEAIVS EAKKEHPPCK STPLTVGLPD
1310 1320 1330 1340 1350
KLLEPKDSDR KTLLETVVPS AVKSPQINFA SSTLQKVAPK QVTLPSSSRE
1360 1370 1380 1390 1400
PTRANQNARH RTWHRGNIAS SSSSLHASQP LGLPPKLPPK KNDKAQNSYI
1410 1420 1430 1440 1450
RKGNALIRNP SNGNHPHSST GHDTQNKLNK PVVRRSMNFV RKADTKDLAN
1460 1470 1480 1490 1500
SNISVERPKT PPLPLHTKSS CPTTLLEPLS QTLQKQHGHE AEKEDLTGQP
1510 1520 1530 1540 1550
KSGVDNSSIK SAQKSEPSDP SKVVYVRPKS NQLVAAQRQH PIDLVNSPTD
1560 1570 1580 1590 1600
KILSLQAPIA YDLYLKKRKN QIVLSSCSPS DGLSTKETLP AENSNSEEKK
1610 1620 1630 1640 1650
DLMIACSISG IPGVKDRPQK ALQTTNNVGR FSHVWTLNGQ QPQRKGFMGS
1660 1670 1680 1690 1700
SHMNAFPRIL PWKRKIFCKN FRSSHMSNVS SIRIVRKLLQ TRKRDMIYTV
1710 1720 1730 1740 1750
STDGFSLRKS GVLSVGGSSL KWSRSLEKRS QKVNKEATLA LAEVERRKRE
1760 1770 1780 1790 1800
KRKRQSLHDK GGNDHQFESV TGNQLRNSRQ SSSDLRKPST CNEYVRVSKG
1810 1820 1830 1840 1850
NQLVRNPKNV IRMLASDKVR WSLHTVRSRL AKKQQYCQFF TRFGECKKPR
1860 1870 1880 1890 1900
GKCPYIHDRA KVTICTKFLK GLCSNTSCKL THKVLPERMP DCSYFLRGLC
1910 1920 1930 1940 1950
TNIACPYRHV KVNLNAPVCE DFLKGYCAYG DECHKKHSYV CPVFEATGEC
1960 1970 1980 1990 2000
PQGSRCKLHH PKSKVKSKSR RPDFLQNSSW GRYFDASIDH QDETRKVSLD
2010 2020 2030 2040 2050
EDEREKPQRV FTDGDLGFIS LDDDADEDVT ALDASDDIPL MELDSGDLSV
2060 2070
QTDNLDALIK PLRIMRTARV
Length:2,070
Mass (Da):227,387
Last modified:January 20, 2016 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA44D7920D5A78381
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP014962 Genomic DNA Translation: BAS98778.1

NCBI Reference Sequences

More...
RefSeqi
XP_015643042.1, XM_015787556.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os06t0638000-00; Os06t0638000-00; Os06g0638000

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4341610

Gramene; a comparative resource for plants

More...
Gramenei
Os06t0638000-00; Os06t0638000-00; Os06g0638000

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4341610

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP014962 Genomic DNA Translation: BAS98778.1
RefSeqiXP_015643042.1, XM_015787556.1

3D structure databases

SMRiA0A0P0WZ32
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4530.OS06T0638000-00

Proteomic databases

PaxDbiA0A0P0WZ32

Genome annotation databases

EnsemblPlantsiOs06t0638000-00; Os06t0638000-00; Os06g0638000
GeneIDi4341610
GrameneiOs06t0638000-00; Os06t0638000-00; Os06g0638000
KEGGiosa:4341610

Phylogenomic databases

OMAiHRGNIAS
OrthoDBi142633at2759

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0P0WZ32_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0P0WZ32
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 20, 2016
Last sequence update: January 20, 2016
Last modified: December 11, 2019
This is version 29 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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