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UniProtKB - A0A0L8IF79 (A0A0L8IF79_OCTBM)

Entry version 19 (07 Oct 2020)
Sequence version 1 (11 Nov 2015)
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Protein

Laminin IV type B domain-containing protein

Gene

OCBIM_22007683mg

Organism
Octopus bimaculoides (California two-spotted octopus)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Laminin IV type B domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:OCBIM_22007683mgImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOctopus bimaculoides (California two-spotted octopus)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri37653 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Spiralia › Lophotrochozoa › Mollusca › Cephalopoda › Coleoidea › Octopodiformes › Octopoda › Incirrata › Octopodidae › Octopus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000053454 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini297 – 528Laminin IV type BInterPro annotationAdd BLAST232

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RPAP1 family.ARBA annotation

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...OMAi		LRPRWCP

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR016024, ARM-type_fold
IPR013015, Laminin_IV_B
IPR013929, RNA_pol_II_AP1_C
IPR013930, RNA_pol_II_AP1_N
IPR039913, RPAP1/Rba50

The PANTHER Classification System

More...PANTHERi		PTHR21483, PTHR21483, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF08620, RPAP1_C, 1 hit
PF08621, RPAP1_N, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48371, SSF48371, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51116, LAMININ_IVB, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Fragment.

A0A0L8IF79-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVHVSLPCSM AVRTHASYIL PFTLSVTPPC HQQSFTNDTK PNQATVAGDT 
        60         70         80         90        100
NLDKGSVARV LSSIIERDTK HYVSYDKPFS LDGFPKAPSL QIGKKFDSTS 
       110        120        130        140        150
APQAKKKSLF AQQFAQQPCS DFSISNKPIY GTASTKCNLE SSYTSHQSIV 
       160        170        180        190        200
TGFGLSASNA EKEAKAIHAE NVNKLSGMTE KEILMERQKL LSMLDPSLIN 
       210        220        230        240        250
FLKTRKSENL DSETTSTSIE NKDDSDKSEL KLVHKLSKDE LPVKPDSQLV 
       260        270        280        290        300
HMDNVEYEKL AWMKDLPPVN ARSTKGKPAR FDFQGFIIPE DAEIPVDLGL 
       310        320        330        340        350
HHHGEEAERA GYTLDELFHL CRSLNSQQRT FALKTLGCII TNAKSGMFEE 
       360        370        380        390        400
SIEGAIIPSV INAGIVFLLR WALDDKITTV LISAVFCLHA LLTNSADENS 
       410        420        430        440        450
LQFTFCWYRG REVAAHQVAE ETSNAAKEKL DFLETVEVTD ADEVQADVVR 
       460        470        480        490        500
ALVNRMNLLP RLRFLLEVWD ISPESIKCIL EILSRISHHS KQDAYNVYKC 
       510        520        530        540        550
PRLMEFIFKE LLPSVCSTDD KTVSSIISTL KLIKVLCQAG RSMATDIVTK 
       560        570        580        590        600
YKLMDKLLLY IAPQPSEMNL SENVADELQT VCYNIWQVCL SYGLTGHYYS 
       610        620        630        640        650
EFYPQLVTNI HIILAQYHNT TNTPFLRESA ILGVLESAVQ LAGAHSRYHQ 
       660        670        680        690        700
KLAACKRQKD SQEPYKIESL IVPSLHWTQV LSLIDTLEIL FQSLLQNISE 
       710        720        730        740        750
KYHLKKFSLN LATSVINFVA SFYEICPQQS DSNVTNILTH LEQLCNSVIF 
       760        770        780        790        800
PLWSTLGFRS IIASLSSHSN ILNHQILLKT KQPKNLLDLG CQNLIDDSKT 
       810        820        830        840        850
LPILVISTPF GFVTALFRLF SVIGSLHKGL ADKFSGLIVN DPDIRSYMTA 
       860        870        880        890        900
VVKTKPTATT FQHNYFTRFE NHCQYFLLRT ISMSTFNEVD TPYFLLCHQL 
       910        920        930        940        950
SLLLLTRLHD GDEHFAHDLL SSLIFNRNFI ALGSDVDSST HQLSCLSISD 
       960        970        980        990       1000
GSGMVCSNSQ LTEDIKFKLL QHSISSLKDI RANYLSSFSQ KESAVLHSKA 
      1010       1020       1030       1040       1050
QCFAYVEEIH SFLVGKLGET LLPRDWIFMP LVHQYSLSNS LPENEHEQCS 
      1060       1070       1080       1090       1100
PQQINKITHA LKFIYLLETQ RPSIMDGLSA SLKISRLMCV YLTDNNIFLE 
      1110       1120       1130       1140       1150
PVVRSYLAGL MRIYSKENIL DSMNFDESIP GLYSFYDFFI EFLKQYTSVS 
      1160       1170       1180       1190       1200
FGDFVFGSYL LLPLQQMHNV FLRKAIWEEN STVLRTLRVS IQDHLIPIHR 
      1210       1220       1230       1240       1250
YLVPEETNPE LLKLLILALL RESVSEKWCP VLYLITVHHC NRFMFRQDGY 
      1260       1270       1280       1290 
EDNLRQFMFS HVLKCSNSQL KEHLLHYKMY NATSNHHIEL YQNLPHN
Length:1,297
Mass (Da):147,194
Last modified:November 11, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFA5EC935B41F2397
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.<p><a href='/help/non_ter' target='_top'>More...</a></p>Non-terminal residuei1297Imported1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KQ415846 Genomic DNA Translation: KOG00147.1

Genome annotation databases

Ensembl metazoan genome annotation project

More...EnsemblMetazoai		Ocbimv22007683m; Ocbimv22007683m.p; Ocbimv22007683m.g

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KQ415846 Genomic DNA Translation: KOG00147.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblMetazoaiOcbimv22007683m; Ocbimv22007683m.p; Ocbimv22007683m.g

Phylogenomic databases

OMAiLRPRWCP

Family and domain databases

InterProiView protein in InterPro
IPR016024, ARM-type_fold
IPR013015, Laminin_IV_B
IPR013929, RNA_pol_II_AP1_C
IPR013930, RNA_pol_II_AP1_N
IPR039913, RPAP1/Rba50
PANTHERiPTHR21483, PTHR21483, 1 hit
PfamiView protein in Pfam
PF08620, RPAP1_C, 1 hit
PF08621, RPAP1_N, 1 hit
SUPFAMiSSF48371, SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS51116, LAMININ_IVB, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0L8IF79_OCTBM
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0L8IF79
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 11, 2015
Last sequence update: November 11, 2015
Last modified: October 7, 2020
This is version 19 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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