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Entry version 20 (12 Aug 2020)
Sequence version 1 (11 Nov 2015)
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Protein
Submitted name:

Arabinosyltransferase

Gene

AFA91_04285

Organism
Mycobacterium goodii (Mycolicibacterium goodii)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Arabinosyl transferase responsible for the polymerization of arabinose into the arabinan of arabinogalactan.ARBA annotation

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosyltransferaseARBA annotation, Transferase
Biological processCell wall biogenesis/degradationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ArabinosyltransferaseImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:AFA91_04285Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMycobacterium goodii (Mycolicibacterium goodii)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri134601 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycolicibacterium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000062255 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei214 – 237HelicalSequence analysisAdd BLAST24
Transmembranei253 – 272HelicalSequence analysisAdd BLAST20
Transmembranei408 – 441HelicalSequence analysisAdd BLAST34
Transmembranei453 – 474HelicalSequence analysisAdd BLAST22
Transmembranei517 – 538HelicalSequence analysisAdd BLAST22
Transmembranei574 – 594HelicalSequence analysisAdd BLAST21
Transmembranei606 – 627HelicalSequence analysisAdd BLAST22
Transmembranei647 – 667HelicalSequence analysisAdd BLAST21
Transmembranei687 – 709HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Keywords - Cellular componenti

Cell membraneARBA annotation, Membrane

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini39 – 207Arabino_trans_NInterPro annotationAdd BLAST169
Domaini211 – 667Arabinose_transInterPro annotationAdd BLAST457
Domaini701 – 1072Arabino_trans_CInterPro annotationAdd BLAST372

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni786 – 813DisorderedSequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi787 – 806PolarSequence analysisAdd BLAST20

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the emb family.ARBA annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisARBA annotation

Phylogenomic databases

KEGG Orthology (KO)

More...
KOi
K11387

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.610, 1 hit
2.60.120.940, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR032731, Arabino_trans_C
IPR042486, Arabino_trans_C_2
IPR007680, Arabino_trans_central
IPR040920, Arabino_trans_N
IPR027451, EmbABC_dom1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14896, Arabino_trans_C, 1 hit
PF17689, Arabino_trans_N, 1 hit
PF04602, Arabinose_trans, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0K0X1J9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTGPHAAGGS NHRTARLVAI VAGLLGTLMA VATPLLPVEQ TTAELNWPQN
60 70 80 90 100
GVWQSVDAPL IGYVATDLNI SVPCQAAAGL VGPQNRNRSV LLSTVPKQAP
110 120 130 140 150
KAIDRGLLIE RINDDLTVIV RNTPVVSAPL DEVLSPACRE LTFTAHADKV
160 170 180 190 200
TGEFVGLTQG PDDDNPGEPL RGERGGYDFR PQIVGVFTDL SGPAPEGLRF
210 220 230 240 250
SATVDTRYST SPTWVKLLAM IVGVAMTVIS LGALHVLDCA DGRRHKRFLP
260 270 280 290 300
SRWWSLTPLD GLVSAMLVWW HFVGANTADD GYILTMARVS ENAGYMANYY
310 320 330 340 350
RWFGTPEAPF GWYYDLLALW SHVSTASVWM RFPTLLMGLA CWWVISREVI
360 370 380 390 400
PRLGTAAKHS RAAAWTAAGV FLAFWLPLNN GLRPEPIIAL GILLTWCSVE
410 420 430 440 450
RGVATSRLLP VAVALIIGAL TLFSGPTGIA AIGALLVAVG PLKTIVAAHT
460 470 480 490 500
SRFGHWALLA PIAAAGTVTI FLIFRDQTLA AELQASSFKS AVGPSLAWFD
510 520 530 540 550
EHIRYSRLFT TSPDGSVARR FAVLTLLLAL AVSIAMTLRK GRIPGTALGP
560 570 580 590 600
SRRIIGITII SFLAMMFTPT KWTHHFGVFA GLAGSLGALA AVAVTATAMK
610 620 630 640 650
SRRNRAVFAA AVLFVTALSF ATVNGWWYVS NFGVPWSNSF PEFKFGFTTM
660 670 680 690 700
LLGLSVVMLL VAAWFHFSGR DVAPDRPRRR WQHVVGAPLA VATWALVVFE
710 720 730 740 750
VVSLTLGMIN QYPAWSVGRS NLNALTGKTC GLANDVLVEQ NANAGMLAPI
760 770 780 790 800
GEPPGQALGA TTSLGFGPNG IPSDVSADPV MEQPGTDNFA DSDSGVVTST
810 820 830 840 850
EVGTEGGTTA AAGINGSRAR LPYGLNPATT PVLGSWRAGT QQPAVLRSAW
860 870 880 890 900
YRLPDRDQAG PLLVVSAAGR FDPGEVVVQW ATDEQAAANQ PGGGITFGDV
910 920 930 940 950
GAAPAWRNLR APLSSIPREA TQIRLVATDD DLAPQHWIAL TPPRIPELRT
960 970 980 990 1000
LQDVVGSSDP VLLDWLVGLA FPCQRPFGHR YGVIEVPEWR ILPDRFGAEA
1010 1020 1030 1040 1050
NSPVMDYLGG GPLGITELLL RPSSVPTYLK DDWFRDWGSL QRLTPWYPDA
1060 1070
EPARLDLGTA TRSGLWSPAP LRLS
Length:1,074
Mass (Da):115,100
Last modified:November 11, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF562DAA2156F1D70
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP012150 Genomic DNA Translation: AKS31227.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AKS31227; AKS31227; AFA91_04285

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mgo:AFA91_04285

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|134601.6.peg.887

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP012150 Genomic DNA Translation: AKS31227.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAKS31227; AKS31227; AFA91_04285
KEGGimgo:AFA91_04285
PATRICifig|134601.6.peg.887

Phylogenomic databases

KOiK11387

Family and domain databases

Gene3Di2.60.120.610, 1 hit
2.60.120.940, 1 hit
InterProiView protein in InterPro
IPR032731, Arabino_trans_C
IPR042486, Arabino_trans_C_2
IPR007680, Arabino_trans_central
IPR040920, Arabino_trans_N
IPR027451, EmbABC_dom1
PfamiView protein in Pfam
PF14896, Arabino_trans_C, 1 hit
PF17689, Arabino_trans_N, 1 hit
PF04602, Arabinose_trans, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0K0X1J9_MYCGD
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0K0X1J9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 11, 2015
Last sequence update: November 11, 2015
Last modified: August 12, 2020
This is version 20 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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