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Entry version 17 (11 Dec 2019)
Sequence version 1 (14 Oct 2015)
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Protein

Integrase catalytic domain-containing protein

Gene

RF55_12227

Organism
Lasius niger (Black garden ant)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Integrase catalytic domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:RF55_12227Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiLasius niger (Black garden ant)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri67767 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaHymenopteraApocritaAculeataFormicoideaFormicidaeFormicinaeLasiusLasius
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000036403 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1385 – 1567Integrase catalyticInterPro annotationAdd BLAST183

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni376 – 404DisorderedSequence analysisAdd BLAST29

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
222689at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.420.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR005312 DUF1759
IPR040676 DUF5641
IPR001584 Integrase_cat-core
IPR041588 Integrase_H2C2
IPR008737 Peptidase_asp_put
IPR008042 Retrotrans_Pao
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05585 DUF1758, 1 hit
PF03564 DUF1759, 1 hit
PF18701 DUF5641, 1 hit
PF17921 Integrase_H2C2, 1 hit
PF05380 Peptidase_A17, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53098 SSF53098, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50994 INTEGRASE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0J7KDN6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNEIFEFSKS ADSSAEAKLM FLHSYSEVAK ITDDFEVSHH KVIQNTEDAE
60 70 80 90 100
FDQEDEIRAK FDKIRRQVGL KYFLLAPKPE NPAPAAADAT SSKIKLPKIT
110 120 130 140 150
LPPFSGDLSL WPSFIALYNR SIHDNPQLAG IEKYQYLLTS LKGEALNVVK
160 170 180 190 200
GMPLSAEHYT IAYDALVKRY QNKRKLASHH WQSIANAKTL KVESPESLRR
210 220 230 240 250
LVDGFSENLR ALELIEFPVD LKDFILLNTL LEKLTPALRE KFEAEHRKSE
260 270 280 290 300
IPKFNQLVDY LLEYCQVLTS LSASGTKAGE KSKDNTKSPS KSASTTSTFV
310 320 330 340 350
ASAALCSICK EAHTVNKCYK FLKLSEKDRY AQAKSLQLCL NCLKGGHRVG
360 370 380 390 400
KCPSNWKCLK CGVKHHTLLH FTSKSGSIDE STTLSPSPTS ETTTPAKTEP
410 420 430 440 450
SVVSMASTSH SSTVVLLSTV QAEMSDVKGD FMPVRILLDS ASQSSFITED
460 470 480 490 500
CVQRSGLGRS PCKMLVLGLS DSKAASTRGR TSIIIRPRGR DDMRFSVDAT
510 520 530 540 550
ILSRISSQLP HYRVNFKSWP HIRGLTLADP EFYQPGSIDI LLGAEQFVSL
560 570 580 590 600
LGTGHRKGTP GEPDALDTVF GWVLMGAINT PSVQPVHSFV STIDKIDASI
610 620 630 640 650
RQFWTVEEVP FNTSLSNDDQ RCENLFRETT RRDTSGRFTV SYPFDGDSPC
660 670 680 690 700
FIDSRQIALS RFRSLECKFK VDSVFRQQYH AFMQDYLTSG HMELISLPAP
710 720 730 740 750
TDGQVYYLPH HGVAKVDSET TKLRVVFDAS SKCTNGVALN QTLLCGPKLQ
760 770 780 790 800
QNIVSILLRF RFGAVAVTAD VKQMFRQIWI EPSQRDYQRI VWRFVDTEPI
810 820 830 840 850
SDYRLNTVTF GVTPSPYLAI RCLMQLAEEG RYSHPLAARV LSSSLYVDDV
860 870 880 890 900
VASVGSVEEA RELRDQLRSL LHSAGFELRK WASSHSSVLS DMDPAHCSAS
910 920 930 940 950
MLSFESKEDN FLKVLGLRWY AHADCFGFHV QPLARECSKR VILSELARIF
960 970 980 990 1000
DPLGFLAPLT FTAKLLIQQL WTLGLGWDEP PPTEICHQWT RYQQELKELA
1010 1020 1030 1040 1050
SLRISRALSY TSVLRTELHG FCDASERGYG AVVYLRVVTS EKTFVRMLIG
1060 1070 1080 1090 1100
KSKVAPLKSL SLPRLELCAA LLLSNLLQYL AQELRDFVVV DASFAWSDST
1110 1120 1130 1140 1150
VALAWIRSSP HKLETFVRNR VARIQENTAN VHWDHVETKS NPADHCSRGL
1160 1170 1180 1190 1200
FPREIIDCRL WWAGPDWLLH FQSTAKLDSF SLETEIAPTV ALLSVEAPSG
1210 1220 1230 1240 1250
LHSLLGRFSS INKICRVIAY ILRFIKRSQR RSIPVTLAVD QLEAHAALLE
1260 1270 1280 1290 1300
LIKVVQAESF AIDLANLNHQ RRISKELRKL APFIDEHGVL RVGGRLVCSS
1310 1320 1330 1340 1350
LPYEAKHPAL IPNRHRLTDL LIERTHKENL HPGRRALQYL ITQHFWILGA
1360 1370 1380 1390 1400
QRAIKRTLSR CLRCFRVNPR EVQSVMADLP ASRVNQVKPF YATGVDFAGP
1410 1420 1430 1440 1450
FSVTPYRARG LKSLKVYVCL FVCFTIKAVH LELVSSLSTD AFLAALRRFI
1460 1470 1480 1490 1500
ARRGRCALLF SDCGTNFVGA NRELLQHMEH ASEVEKIKWA FNPPSAPHFG
1510 1520 1530 1540 1550
GLWEAGVKAF KTHFNRVIGE QILSLEEFST VLAQIEAVLN SRPLCPLSAD
1560 1570 1580 1590 1600
PNDLAVLTPG HFLTTEALVS MPSPDLTSLS MNRLDRWQLL QRMFQDFWKR
1610 1620 1630 1640 1650
WSLEYLQTLQ QRPKWHSKGV NLSDGHLVLI KETNAPPLRW KLGRIVELHQ
1660 1670 1680
GQDAVVRVAT VRTAGGTLTR PLVKLCPLPM GHSSQEV
Length:1,687
Mass (Da):189,649
Last modified:October 14, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i944ECE1886EB7228
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
LBMM01009202 Genomic DNA Translation: KMQ88311.1

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LBMM01009202 Genomic DNA Translation: KMQ88311.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Phylogenomic databases

OrthoDBi222689at2759

Family and domain databases

Gene3Di3.30.420.10, 1 hit
InterProiView protein in InterPro
IPR005312 DUF1759
IPR040676 DUF5641
IPR001584 Integrase_cat-core
IPR041588 Integrase_H2C2
IPR008737 Peptidase_asp_put
IPR008042 Retrotrans_Pao
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf
PfamiView protein in Pfam
PF05585 DUF1758, 1 hit
PF03564 DUF1759, 1 hit
PF18701 DUF5641, 1 hit
PF17921 Integrase_H2C2, 1 hit
PF05380 Peptidase_A17, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
PROSITEiView protein in PROSITE
PS50994 INTEGRASE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0J7KDN6_LASNI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0J7KDN6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2015
Last sequence update: October 14, 2015
Last modified: December 11, 2019
This is version 17 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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