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Entry version 31 (07 Apr 2021)
Sequence version 1 (16 Sep 2015)
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Protein
Submitted name:

Ig domain protein group 1 domain protein

Gene

YPK_1315

Organism
Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Ig domain protein group 1 domain proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:YPK_1315Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiYersinia pseudotuberculosis serotype O:3 (strain YPIII)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri502800 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000721 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Miscellaneous databases

Pathogen-Host Interaction database

More...
PHI-basei
PHI:7996

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi1859 ↔ 1939Combined sources

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A0A0H3B1G5

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini73 – 121LysMInterPro annotationAdd BLAST49
Domaini535 – 626Big-1InterPro annotationAdd BLAST92
Domaini636 – 727Big-1InterPro annotationAdd BLAST92
Domaini737 – 828Big-1InterPro annotationAdd BLAST92
Domaini838 – 929Big-1InterPro annotationAdd BLAST92
Domaini939 – 1030Big-1InterPro annotationAdd BLAST92
Domaini1040 – 1131Big-1InterPro annotationAdd BLAST92
Domaini1141 – 1232Big-1InterPro annotationAdd BLAST92
Domaini1242 – 1333Big-1InterPro annotationAdd BLAST92
Domaini1343 – 1434Big-1InterPro annotationAdd BLAST92
Domaini1444 – 1535Big-1InterPro annotationAdd BLAST92
Domaini1545 – 1636Big-1InterPro annotationAdd BLAST92
Domaini1646 – 1736Big-1InterPro annotationAdd BLAST91
Domaini1744 – 1834Big-1InterPro annotationAdd BLAST91

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the intimin/invasin family.ARBA annotation

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...
OMAi
IVSTDTH

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00118, LysM, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.160.160, 1 hit
2.60.40.10, 13 hits
3.10.350.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003344, Big_1_dom
IPR024519, IAT_beta
IPR038177, IAT_beta_sf
IPR013783, Ig-like_fold
IPR003599, Ig_sub
IPR003535, Intimin/invasin_bac
IPR008964, Invasin/intimin_cell_adhesion
IPR015217, Invasin_dom_3
IPR018392, LysM_dom
IPR036779, LysM_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11924, IAT_beta, 1 hit
PF09134, Invasin_D3, 13 hits

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR01369, INTIMIN

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00634, BID_1, 13 hits
SM00409, IG, 9 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49373, SSF49373, 13 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51127, BIG1, 13 hits
PS51782, LYSM, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0H3B1G5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIKYFSFFKK PEPIVGILPN RQSHHILPTH IRRVAWGTLL LQLFIPLSVS
60 70 80 90 100
FSPAIAAMKA SKADTMVSYS STEPYVLGSG ETVAMVAKKY GITVDELKKI
110 120 130 140 150
NIYRTFSRPF TALTTGDEID IPRKASPFSV DNNKDNRLSV ENTLAGHAVA
160 170 180 190 200
GATALSNGDV AKSGERMVRS AASNEFNNSA QQWLSQFGTA RVQLNINDDF
210 220 230 240 250
HLDGSAADVL IPLYDNEKSI LFTQLGARNK DSRNTVNMGA GVRTFQGNWM
260 270 280 290 300
YGANTFFDND LTGKNRRIGV GAEAWTDYLK LSANNYFGIT DWHQSRDFID
310 320 330 340 350
YNERPANGYD LRAEAYLPSY PQLGGKAMYE KYRGDDVALF GKDNRQKNPH
360 370 380 390 400
AITAGVNYTP IPLVTIGAEH RAGKGGQNDS NINFQLNYRL GETWQSHIDP
410 420 430 440 450
SAVAASRTLA GSRYDLVERN NHIVLDYQKQ NLVRLSLPDS LAGDPFSQLS
460 470 480 490 500
VTAQVTATHG LERIDWQSAE LMAAGGVLKQ TSKNGLEITL PEYQMNRTGG
510 520 530 540 550
NSYILNAIAY DTQGNASSQA SMLITVNAQK INIANSTLVA VPINIEANNS
560 570 580 590 600
DTSVVTLTLK DDNNIPVTGQ DVTFLSPLGT LSAMTDSGNG VYTATLTAGT
610 620 630 640 650
VSGTTAVSSN INGSALDMTP ATVTLNGNSG ELSITHSMLV AAPVNIEANG
660 670 680 690 700
SDTSVVTLTL RDSNNNPVTG QTVTFAGTLG TLGAVTEGSS GVYTATLTAG
710 720 730 740 750
IMVGTSSITA SVNSTALGVT PATVTLNGDS GNLSTTNSTL VAAPVNIEAN
760 770 780 790 800
SSDTSVVTLT LRDNNNNPVT GQTVVFTSTL GTLGNVTEQA SGVYTATLTA
810 820 830 840 850
GTVSGVASLS VSVGGNALGV TPATVTLNGD SGNLSTTNST LVAAPVNIEA
860 870 880 890 900
NSSDTSVVTL TLRDNNNNPV TGQTVNFAGT LGTLGTVSEG SSGVYTTTLT
910 920 930 940 950
AGTVAGVASL SVNVGGNALG VTPATVTLNG NSGNLSATNS TLVAAPVNIE
960 970 980 990 1000
ANSSDTSVVT LTLRDNNNNP VTGQTVAFTS TLGTLGNVTE QASGVYTATL
1010 1020 1030 1040 1050
TAGTVSGVAS LSVSVNSNAL GVTPATVTLN GDSGNLSTTN STLVAAPVNI
1060 1070 1080 1090 1100
EANSSDTSVV TLTLRDNNNN PVTGQTVAFT STLGTLGNVT EQASGLYTAT
1110 1120 1130 1140 1150
LTAGTVSGVA SLSVNVGGNA LGVTPATVTL NGDSGNLSAT NSTLVAAPVN
1160 1170 1180 1190 1200
IEANSSDTSV VTLTLRDNNN NPVTGQTVAF TSTLGTLGNV TEQASGLYTA
1210 1220 1230 1240 1250
TLTAGTVSGV ASLSVNVGGT ALGVTPATVT LNGDSGNLST TNSTLVAAPV
1260 1270 1280 1290 1300
NIEANSSDTS VVTLTLRDNN NNPVTGQTVA FTSTLGTLGN VTEQASGLYT
1310 1320 1330 1340 1350
ATLTAGTVSG VASLSVSVNS TALGVTPATV TLNGDSGNLS TTNSTLVAAP
1360 1370 1380 1390 1400
VNIEANSSDT SVVTLTLRDN NNNPVTGQTV AFTSTLGTLG NVTEQASGVY
1410 1420 1430 1440 1450
TATLTAGTVA GVASLSVNVG GNALGVTPAT VTLNGDSGNL STTNSTLVAA
1460 1470 1480 1490 1500
PVNIEANSSD TSVVTLTLRD NNNNPVTGQT VAFTSTLGTL GNVTEQASGV
1510 1520 1530 1540 1550
YTATLTAGTV SGVASLSVSV GSSALGVTPA TVTLNGDSGN LSTTNSTLVA
1560 1570 1580 1590 1600
APVNIEANNS DTSVVTLTLR DNNNNPVTGQ TVAFTSTLGT LGNVTEQASG
1610 1620 1630 1640 1650
VYTATLTAGT VSGVASLSVS VNSNALGVTP ATVTLNGDSG NLSTTNSTLV
1660 1670 1680 1690 1700
AAPVNIEANS SDTSVVTLTL RDNNNNPVTG QTVVFTSTLG TLGNVTEQAS
1710 1720 1730 1740 1750
GLYTATLTAG TVSGVASLSV SVGGNALGVT GNITLAPGAL DAARSILAVN
1760 1770 1780 1790 1800
KPSINADDRI GSTITFTAQD AQGNAITGLD IAFMTDLENS QIMTLVDHND
1810 1820 1830 1840 1850
GTYTANINGT QTGIANIAVQ SSGATIAGLA ATMVTITPGA WNTTQATPVM
1860 1870 1880 1890 1900
TVALPITTCQ SSSGVYKRYY IGIVTHELYD NYGNEISGIL TYNLGAGRYT
1910 1920 1930 1940 1950
TVTSQNSSVS GSNGLTRRSN SPVSHFILTS DAYTSQAACY AERIANVNVT
1960 1970
ITVTAITDDF KTSAVNKVFI LGTGSN
Length:1,976
Mass (Da):201,208
Last modified:September 16, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1E7F01C3FCE9FE4B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000950 Genomic DNA Translation: ACA67611.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACA67611; ACA67611; YPK_1315

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ypy:YPK_1315

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|502800.11.peg.1950

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000950 Genomic DNA Translation: ACA67611.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5LDYX-ray2.60A/B1640-1976[»]
SMRiA0A0H3B1G5
ModBaseiSearch...
PDBe-KBiSearch...

Genome annotation databases

EnsemblBacteriaiACA67611; ACA67611; YPK_1315
KEGGiypy:YPK_1315
PATRICifig|502800.11.peg.1950

Phylogenomic databases

OMAiIVSTDTH

Miscellaneous databases

PHI-baseiPHI:7996

Family and domain databases

CDDicd00118, LysM, 1 hit
Gene3Di2.40.160.160, 1 hit
2.60.40.10, 13 hits
3.10.350.10, 1 hit
InterProiView protein in InterPro
IPR003344, Big_1_dom
IPR024519, IAT_beta
IPR038177, IAT_beta_sf
IPR013783, Ig-like_fold
IPR003599, Ig_sub
IPR003535, Intimin/invasin_bac
IPR008964, Invasin/intimin_cell_adhesion
IPR015217, Invasin_dom_3
IPR018392, LysM_dom
IPR036779, LysM_dom_sf
PfamiView protein in Pfam
PF11924, IAT_beta, 1 hit
PF09134, Invasin_D3, 13 hits
PRINTSiPR01369, INTIMIN
SMARTiView protein in SMART
SM00634, BID_1, 13 hits
SM00409, IG, 9 hits
SUPFAMiSSF49373, SSF49373, 13 hits
PROSITEiView protein in PROSITE
PS51127, BIG1, 13 hits
PS51782, LYSM, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0H3B1G5_YERPY
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0H3B1G5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 16, 2015
Last sequence update: September 16, 2015
Last modified: April 7, 2021
This is version 31 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

3D-structureCombined sources
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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