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Entry version 31 (07 Oct 2020)
Sequence version 1 (16 Sep 2015)
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Protein

50S ribosomal protein L32

Gene

rpmF

Organism
Xanthomonas perforans
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImportedARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
50S ribosomal protein L32UniRule annotationARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpmFUniRule annotation
ORF Names:BJD13_11110Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiXanthomonas perforansImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri442694 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000184798 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A0A0G9DDN3

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 35DisorderedSequence analysisAdd BLAST35

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL32 family.UniRule annotationARBA annotation

Phylogenomic databases

KEGG Orthology (KO)

More...
KOi
K02911

Database of Orthologous Groups

More...
OrthoDBi
2092354at2

Family and domain databases

HAMAP database of protein families

More...
HAMAPi
MF_00340, Ribosomal_L32, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002677, Ribosomal_L32p
IPR011332, Ribosomal_zn-bd

The PANTHER Classification System

More...
PANTHERi
PTHR35534, PTHR35534, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01783, Ribosomal_L32p, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57829, SSF57829, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01031, rpmF_bact, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0G9DDN3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAVQKSRVTP SRRGQRRSHD ALTAKQLSTD PTSGEIHLRH HITADGYYRG
60
KKVIATKSSA VQED
Length:64
Mass (Da):7,130
Last modified:September 16, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE68D01AE91B1D88E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP018475 Genomic DNA Translation: APO99564.1

NCBI Reference Sequences

More...
RefSeqi
WP_003483870.1, NZ_WMCJ01000001.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
KLC05507; KLC05507; XP315_11015
KLC07261; KLC07261; XP4B_17885
KLC10440; KLC10440; XP420_01675
KLC16726; KLC16726; XP56_14655
KLC24813; KLC24813; XP712_00710
KLC26085; KLC26085; XP816_07540
KLC30436; KLC30436; XP95_12620
KLC31982; KLC31982; XP1013_13515
KLC39284; KLC39284; XP112_00555
KLC41719; KLC41719; XP1815_21795
KLC47234; KLC47234; XP1511_09410
KLC49212; KLC49212; XP1712_09420
KLC56488; KLC56488; XP2010_04435
KLC63114; KLC63114; GEV839_13385
KLC64847; KLC64847; GEV872_02605
KLC69128; KLC69128; GEV893_09450
KLC76382; KLC76382; GEV909_07825
KLC79843; KLC79843; GEV915_13240
KLC82663; KLC82663; GEV904_02220
KLC87324; KLC87324; GEV940_19315
KLC91227; KLC91227; GEV917_03510
KLC94514; KLC94514; GEV936_05065
KLC97071; KLC97071; GEV968_20675
KLC99412; KLC99412; GEV993_18905
KLD03976; KLD03976; GEV1001_11640
KLD16582; KLD16582; GEV1054_15290
KLD16843; KLD16843; GEV1044_09070
KLD16906; KLD16906; GEV1026_06005
KLD23261; KLD23261; GEV1063_19465
KLD30130; KLD30130; TB6_07400
KLD32082; KLD32082; TB9_20650
KLD37375; KLD37375; TB15x_15785

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
48144782

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
xpe:BJD13_11110

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|442694.28.peg.3833

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP018475 Genomic DNA Translation: APO99564.1
RefSeqiWP_003483870.1, NZ_WMCJ01000001.1

3D structure databases

SMRiA0A0G9DDN3
ModBaseiSearch...

Genome annotation databases

EnsemblBacteriaiKLC05507; KLC05507; XP315_11015
KLC07261; KLC07261; XP4B_17885
KLC10440; KLC10440; XP420_01675
KLC16726; KLC16726; XP56_14655
KLC24813; KLC24813; XP712_00710
KLC26085; KLC26085; XP816_07540
KLC30436; KLC30436; XP95_12620
KLC31982; KLC31982; XP1013_13515
KLC39284; KLC39284; XP112_00555
KLC41719; KLC41719; XP1815_21795
KLC47234; KLC47234; XP1511_09410
KLC49212; KLC49212; XP1712_09420
KLC56488; KLC56488; XP2010_04435
KLC63114; KLC63114; GEV839_13385
KLC64847; KLC64847; GEV872_02605
KLC69128; KLC69128; GEV893_09450
KLC76382; KLC76382; GEV909_07825
KLC79843; KLC79843; GEV915_13240
KLC82663; KLC82663; GEV904_02220
KLC87324; KLC87324; GEV940_19315
KLC91227; KLC91227; GEV917_03510
KLC94514; KLC94514; GEV936_05065
KLC97071; KLC97071; GEV968_20675
KLC99412; KLC99412; GEV993_18905
KLD03976; KLD03976; GEV1001_11640
KLD16582; KLD16582; GEV1054_15290
KLD16843; KLD16843; GEV1044_09070
KLD16906; KLD16906; GEV1026_06005
KLD23261; KLD23261; GEV1063_19465
KLD30130; KLD30130; TB6_07400
KLD32082; KLD32082; TB9_20650
KLD37375; KLD37375; TB15x_15785
GeneIDi48144782
KEGGixpe:BJD13_11110
PATRICifig|442694.28.peg.3833

Phylogenomic databases

KOiK02911
OrthoDBi2092354at2

Family and domain databases

HAMAPiMF_00340, Ribosomal_L32, 1 hit
InterProiView protein in InterPro
IPR002677, Ribosomal_L32p
IPR011332, Ribosomal_zn-bd
PANTHERiPTHR35534, PTHR35534, 1 hit
PfamiView protein in Pfam
PF01783, Ribosomal_L32p, 1 hit
SUPFAMiSSF57829, SSF57829, 1 hit
TIGRFAMsiTIGR01031, rpmF_bact, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0G9DDN3_9XANT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0G9DDN3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 16, 2015
Last sequence update: September 16, 2015
Last modified: October 7, 2020
This is version 31 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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