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Entry version 48 (07 Apr 2021)
Sequence version 1 (16 Sep 2015)
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Protein

3'-5' exoribonuclease YhaM

Gene

yhaM

Organism
Bacillus cereus
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Shows a 3'-5' exoribonuclease activity.UniRule annotation

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionExonucleaseUniRule annotationImportedARBA annotation, Hydrolase, Nuclease

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
3'-5' exoribonuclease YhaMUniRule annotation (EC:3.1.-.-UniRule annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:yhaMUniRule annotationImported
ORF Names:A6E21_07865Imported, A9485_27730Imported, ACS95_19820Imported, AT272_14015Imported, AWW71_05515Imported, B4079_1356Imported, B4080_1104Imported, BACERE00184_04194Imported, BC2903_52080Imported, BHL25_03015Imported, BHL27_23645Imported, BLX06_14335Imported, C6A78_21310Imported, C6Y54_04620Imported, CJ306_05445Imported, CN950_08745Imported, COI98_01075Imported, CON37_23700Imported, CV717_01655Imported, CW365_03720Imported, DR116_0001990Imported, E2F98_11020Imported, F8172_20905Imported, FC692_19295Imported, FC695_04180Imported, FOC75_03140Imported, HLB41_22085Imported, TU58_04380Imported, WR52_05140Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus cereusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1396 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillusBacillus cereus group
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000190272 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000250731 Componenti: Unassembled WGS sequence
  • UP000503102 Componenti: Chromosome
  • UP000456199 Componenti: Unassembled WGS sequence
  • UP000503559 Componenti: Chromosome
  • UP000075717 Componenti: Unassembled WGS sequence
  • UP000249978 Componenti: Unassembled WGS sequence
  • UP000183583 Componenti: Unassembled WGS sequence
  • UP000035364 Componenti: Unassembled WGS sequence
  • UP000253597 Componenti: Unassembled WGS sequence
  • UP000075480 Componenti: Unassembled WGS sequence
  • UP000070653 Componenti: Unassembled WGS sequence
  • UP000262166 Componenti: Chromosome
  • UP000298077 Componenti: Unassembled WGS sequence
  • UP000233489 Componenti: Unassembled WGS sequence
  • UP000475765 Componenti: Unassembled WGS sequence
  • UP000067412 Componenti: Unassembled WGS sequence
  • UP000076832 Componenti: Chromosome
  • UP000308444 Componenti: Unassembled WGS sequence
  • UP000190595 Componenti: Unassembled WGS sequence
  • UP000221280 Componenti: Unassembled WGS sequence
  • UP000306829 Componenti: Unassembled WGS sequence
  • UP000036308 Componenti: Unassembled WGS sequence
  • UP000297968 Componenti: Unassembled WGS sequence
  • UP000290147 Componenti: Unassembled WGS sequence
  • UP000194482 Componenti: Unassembled WGS sequence
  • UP000224413 Componenti: Unassembled WGS sequence
  • UP000190641 Componenti: Unassembled WGS sequence
  • UP000219892 Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini163 – 279HDInterPro annotationAdd BLAST117

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the YhaM family.UniRule annotation

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
2018439at2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00077, HDc, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_01427, 3_5_Exoribonuc_YhaM, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR020873, 3'-5'_exoribonuclease_YhaM
IPR003607, HD/PDEase_dom
IPR006674, HD_domain
IPR012340, NA-bd_OB-fold
IPR004365, NA-bd_OB_tRNA

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01966, HD, 1 hit
PF01336, tRNA_anti-codon, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00471, HDc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50249, SSF50249, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51831, HD, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0G8EVE4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKKIAEYEV GEQVDIFLLI KTATKGIASN GKPFLTVILQ DPSGDIEAKL
60 70 80 90 100
WDVSPEVEKQ YVAETIVKVA GDILNYKGRI QLRVKQIRVA NENEVTDISD
110 120 130 140 150
FVEKAPVKKE DMVEKITQYI FEMRNPNIQR LTRHLLNKHQ NEFLDYPAAT
160 170 180 190 200
KNHHEFVSGL AYHVVSMLDL AKAISNLYPS LDKDLLYAGV ILHDLGKVIE
210 220 230 240 250
LSGPISTTYT LEGNLLGHIS IMVNEIGKAA DELQIDAEEV LILQHIVLSH
260 270 280 290 300
HGKAEWGSPK PPLVKEAEIL HYIDNLDAKM NMMDRALGRT KPGEYTERVF
310
ALDNRSFYKP SFHN
Length:314
Mass (Da):35,514
Last modified:September 16, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i57EEFAC9CF7B0FE8
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP011155 Genomic DNA Translation: ANC18156.1
CP023245 Genomic DNA Translation: ASZ64809.1
BIYC01000035 Genomic DNA Translation: GCF71389.1
WBPP01000037 Genomic DNA Translation: KAB2390643.1
LCYK01000063 Genomic DNA Translation: KLA27437.1
LABH01000016 Genomic DNA Translation: KMQ31278.1
LRPI01000099 Genomic DNA Translation: KWU67931.1
LQZO01000189 Genomic DNA Translation: KXI47166.1
LOMR01000082 Genomic DNA Translation: KXY71492.1
LJIT01000040 Genomic DNA Translation: KYQ03347.1
PVON01000007 Genomic DNA Translation: NCA64775.1
LZQY01000037 Genomic DNA Translation: OJD97228.1
MUAU01000040 Genomic DNA Translation: OOR74361.1
MQTB01000005 Genomic DNA Translation: OOZ90739.1
MQTE01000042 Genomic DNA Translation: OOZ95865.1
NVMY01000078 Genomic DNA Translation: PEA02210.1
NUWJ01000013 Genomic DNA Translation: PFK27868.1
NUHJ01000016 Genomic DNA Translation: PGM68348.1
PIYQ01000020 Genomic DNA Translation: PKF99329.1
PHHT01000001 Genomic DNA Translation: PWN79150.1
CP053289 Genomic DNA Translation: QJU36409.1
CP053991 Genomic DNA Translation: QKH64616.1
LWLW01000080 Genomic DNA Translation: RAS95960.1
QNGD03000001 Genomic DNA Translation: RWQ77847.1
FWYT01000125 Genomic DNA Translation: SME30814.1
SNQO01000039 Genomic DNA Translation: TEX14715.1
PVRX01000022 Genomic DNA Translation: TFZ14052.1
SZOE01000163 Genomic DNA Translation: TKH25600.1
SZOH01000223 Genomic DNA Translation: TKJ07227.1

NCBI Reference Sequences

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RefSeqi
WP_000726638.1, NZ_WBPP01000037.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ANC18156; ANC18156; WR52_05140
ASZ64809; ASZ64809; CJ306_05445
KLA27437; KLA27437; B4080_1104
KMQ31278; KMQ31278; TU58_04380
KWU67931; KWU67931; AWW71_05515
KXI47166; KXI47166; ACS95_19820
KXY71492; KXY71492; AT272_14015
KYQ03347; KYQ03347; B4079_1356
OJD97228; OJD97228; A9485_27730
OOR74361; OOR74361; BLX06_14335
OOZ90739; OOZ90739; BHL25_03015
PEA02210; PEA02210; CON37_23700
PFK27868; PFK27868; COI98_01075
PGM68348; PGM68348; CN950_08745
PKF99329; PKF99329; CW365_03720
PWN79150; PWN79150; CV717_01655
RAS95960; RAS95960; A6E21_07865
SME10765; SME10765; BACERE00191_03049
SME30814; SME30814; BACERE00184_04194

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
59157295

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1396.426.peg.936

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP011155 Genomic DNA Translation: ANC18156.1
CP023245 Genomic DNA Translation: ASZ64809.1
BIYC01000035 Genomic DNA Translation: GCF71389.1
WBPP01000037 Genomic DNA Translation: KAB2390643.1
LCYK01000063 Genomic DNA Translation: KLA27437.1
LABH01000016 Genomic DNA Translation: KMQ31278.1
LRPI01000099 Genomic DNA Translation: KWU67931.1
LQZO01000189 Genomic DNA Translation: KXI47166.1
LOMR01000082 Genomic DNA Translation: KXY71492.1
LJIT01000040 Genomic DNA Translation: KYQ03347.1
PVON01000007 Genomic DNA Translation: NCA64775.1
LZQY01000037 Genomic DNA Translation: OJD97228.1
MUAU01000040 Genomic DNA Translation: OOR74361.1
MQTB01000005 Genomic DNA Translation: OOZ90739.1
MQTE01000042 Genomic DNA Translation: OOZ95865.1
NVMY01000078 Genomic DNA Translation: PEA02210.1
NUWJ01000013 Genomic DNA Translation: PFK27868.1
NUHJ01000016 Genomic DNA Translation: PGM68348.1
PIYQ01000020 Genomic DNA Translation: PKF99329.1
PHHT01000001 Genomic DNA Translation: PWN79150.1
CP053289 Genomic DNA Translation: QJU36409.1
CP053991 Genomic DNA Translation: QKH64616.1
LWLW01000080 Genomic DNA Translation: RAS95960.1
QNGD03000001 Genomic DNA Translation: RWQ77847.1
FWYT01000125 Genomic DNA Translation: SME30814.1
SNQO01000039 Genomic DNA Translation: TEX14715.1
PVRX01000022 Genomic DNA Translation: TFZ14052.1
SZOE01000163 Genomic DNA Translation: TKH25600.1
SZOH01000223 Genomic DNA Translation: TKJ07227.1
RefSeqiWP_000726638.1, NZ_WBPP01000037.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiANC18156; ANC18156; WR52_05140
ASZ64809; ASZ64809; CJ306_05445
KLA27437; KLA27437; B4080_1104
KMQ31278; KMQ31278; TU58_04380
KWU67931; KWU67931; AWW71_05515
KXI47166; KXI47166; ACS95_19820
KXY71492; KXY71492; AT272_14015
KYQ03347; KYQ03347; B4079_1356
OJD97228; OJD97228; A9485_27730
OOR74361; OOR74361; BLX06_14335
OOZ90739; OOZ90739; BHL25_03015
PEA02210; PEA02210; CON37_23700
PFK27868; PFK27868; COI98_01075
PGM68348; PGM68348; CN950_08745
PKF99329; PKF99329; CW365_03720
PWN79150; PWN79150; CV717_01655
RAS95960; RAS95960; A6E21_07865
SME10765; SME10765; BACERE00191_03049
SME30814; SME30814; BACERE00184_04194
GeneIDi59157295
PATRICifig|1396.426.peg.936

Phylogenomic databases

OrthoDBi2018439at2

Family and domain databases

CDDicd00077, HDc, 1 hit
HAMAPiMF_01427, 3_5_Exoribonuc_YhaM, 1 hit
InterProiView protein in InterPro
IPR020873, 3'-5'_exoribonuclease_YhaM
IPR003607, HD/PDEase_dom
IPR006674, HD_domain
IPR012340, NA-bd_OB-fold
IPR004365, NA-bd_OB_tRNA
PfamiView protein in Pfam
PF01966, HD, 1 hit
PF01336, tRNA_anti-codon, 1 hit
SMARTiView protein in SMART
SM00471, HDc, 1 hit
SUPFAMiSSF50249, SSF50249, 1 hit
PROSITEiView protein in PROSITE
PS51831, HD, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0G8EVE4_BACCE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0G8EVE4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 16, 2015
Last sequence update: September 16, 2015
Last modified: April 7, 2021
This is version 48 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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