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Entry version 16 (10 Apr 2019)
Sequence version 1 (22 Jul 2015)
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Protein
Submitted name:

SPATA31 subfamily D, member 3

Gene

Spata31d3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
SPATA31 subfamily D, member 3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Spata31d3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRattus norvegicus (Rat)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10116 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002494 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 17

Organism-specific databases

Rat genome database

More...
RGDi
1311452 Spata31d3

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei26 – 51HelicalSequence analysisAdd BLAST26

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSRNOG00000056413 Expressed in 1 organ(s), highest expression level in testis

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini68 – 151DUF4599InterPro annotationAdd BLAST84
Domaini380 – 750FAM75InterPro annotationAdd BLAST371

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

Ensembl GeneTree

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GeneTreei
ENSGT00950000183043

Identification of Orthologs from Complete Genome Data

More...
OMAi
VGQNYPT

Database of Orthologous Groups

More...
OrthoDBi
76827at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR027970 DUF4599
IPR039509 SPATA31/FAM205

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF15371 DUF4599, 1 hit
PF14650 FAM75, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0G2JUN1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MENIFSSLNG LTETWLTFGS ASYHKYLSYI LLSGLGLLLL YISSLIVRLL
60 70 80 90 100
ARSLQRKKYA PKLQNNIRHR RGKAFKRKKA GQRDPETAKK LQITLQSKPH
110 120 130 140 150
NPTGFRQLLW SEPLCSIYNK TSPLVSYLLS QAPLEDGGDA ALVSSLPSRA
160 170 180 190 200
PVTEAPIALP SGFPANQPGL PALEAPLHTS LSTLSQDQIT PPDGVSPSTP
210 220 230 240 250
LRASLSPQAI APLKPAVLLT HTPCKMLTSS PLATQEAQLA LRAESPREQS
260 270 280 290 300
SNASTAKSTI YESASSQLWF SAEDQPRTNL PHVKPYASRG SYRRLTKVHA
310 320 330 340 350
AEPEDHLSPG PDVLALFKRQ EKRDADVAAY KLKKEKTVSF LIPESTSGEI
360 370 380 390 400
SASSADVENA DLYHLLGKKK GEPGGPHPQQ EPSHLKNSED QSEIKDNQLF
410 420 430 440 450
WGLPSLHSES LKHEAANSVN SYPERDDFHR IAEASTGRES SNLTYPIPLL
460 470 480 490 500
LPESDQQGQT VPQSQIKPDS PTDSKAQTQS RLPFLPSSPQ SQLRICGVRF
510 520 530 540 550
HSLKDEGQPL APYELQQLEY NLLQKTLQGF LGLPTLTQRF QEGFGPSPPK
560 570 580 590 600
ISSTRHSSKA HAPKKILPGD FPFNYKLERK LEHHLRKRLI QRRWGLPQRI
610 620 630 640 650
RESLSFMNPH SKIPEVPEAR NSHGLSWISH YKFNTNSLSG LGLSQTSSFH
660 670 680 690 700
KKPLESHSLK AKDVKVQGQC PGIGQRDHIQ GDSSGALMSR VHSNSETDPE
710 720 730 740 750
LQLRDMSGKI SKASLVKQCQ RECESFLQEQ LGRNTKEISR GEMSSAADRS
760 770 780 790 800
GHSTNMAQTP PGTSPRQVAP LLSEEDARKE HEHSLTLSDN QEKVLEEHIT
810 820 830 840 850
DFGRRMAFGL PQRVEESLES YLTRAEPSQP FPQLHTRAHS VCTVDSDKPS
860 870 880 890 900
RFLRRNTNGD RKGTVDLVPV QHRPLPAAWL AGHTQPASEN KKVCVDKDLS
910 920 930 940 950
MAPSGREPIK HWTPSMAHKG IRQHSRSDSR PDPEPPMSPD GPTEERLASS
960 970 980 990 1000
NNTQGSQGER KNWKDCSMAE GSTDLHKGEQ LPGPDPQSTK NLKGTQDLCS
1010 1020 1030 1040 1050
PGSHATECQS LQGMSVPQDS ETPHSKSQVS TEVVPNSEGE THIQVPDLPA
1060 1070 1080 1090 1100
TAFASEEMTS KPRGPSSGDM AVSQVLHVHF PSVGINMEPR QGPWVPAYVS
1110 1120 1130 1140 1150
GKSKNKDCPP AARGVPPLVT EAGKLGGGDA GLGTSQTRGK RHCAQARAAE
1160 1170 1180 1190 1200
ETQGHTSSPA LTPKSQPLEN QFPNQVKGFW QRLSPGRKHK GQEKILARGC
1210 1220 1230 1240 1250
SSLMPVKGAS LIKGRCEFCG NTAAQKCVRE PGMVLRKQLG FRHWTVIPCP
1260 1270 1280 1290 1300
QAPVSPLMGS VEAQQELQLQ AQAEPAQRLP HFCCRASCSQ VQRAESCSPG
1310 1320 1330
QGQTALERCG TTGKAKMVEP SPMHASPPKS YL
Length:1,332
Mass (Da):146,043
Last modified:July 22, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i68D9ED474492599C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AABR07026930 Genomic DNA No translation available.

NCBI Reference Sequences

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RefSeqi
XP_008769690.1, XM_008771468.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSRNOT00000079938; ENSRNOP00000069160; ENSRNOG00000056413

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
306725

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
rno:306725

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07026930 Genomic DNA No translation available.
RefSeqiXP_008769690.1, XM_008771468.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000079938; ENSRNOP00000069160; ENSRNOG00000056413
GeneIDi306725
KEGGirno:306725

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
389762
RGDi1311452 Spata31d3

Phylogenomic databases

GeneTreeiENSGT00950000183043
OMAiVGQNYPT
OrthoDBi76827at2759

Gene expression databases

BgeeiENSRNOG00000056413 Expressed in 1 organ(s), highest expression level in testis

Family and domain databases

InterProiView protein in InterPro
IPR027970 DUF4599
IPR039509 SPATA31/FAM205
PfamiView protein in Pfam
PF15371 DUF4599, 1 hit
PF14650 FAM75, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0G2JUN1_RAT
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0G2JUN1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2015
Last sequence update: July 22, 2015
Last modified: April 10, 2019
This is version 16 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health

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