Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Auxin response factor

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi93 – 195TF-B3PROSITE-ProRule annotationAdd BLAST103

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processAuxin signaling pathwayUniRule annotationSAAS annotation, Transcription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin response factorUniRule annotation
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 11

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Subunit structurei

Homodimers and heterodimers.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini93 – 195TF-B3InterPro annotationAdd BLAST103
Domaini669 – 753PB1InterPro annotationAdd BLAST85

Sequence similaritiesi

Belongs to the ARF family.UniRule annotation

Family and domain databases

CDDicd10017 B3_DNA, 1 hit
Gene3Di2.40.330.10, 1 hit
InterProiView protein in InterPro
IPR033389 AUX/IAA_dom
IPR010525 Auxin_resp
IPR003340 B3_DNA-bd
IPR015300 DNA-bd_pseudobarrel_sf
IPR000270 PB1_dom
PfamiView protein in Pfam
PF02309 AUX_IAA, 1 hit
PF06507 Auxin_resp, 1 hit
PF02362 B3, 1 hit
SMARTiView protein in SMART
SM01019 B3, 1 hit
SUPFAMiSSF101936 SSF101936, 1 hit
PROSITEiView protein in PROSITE
PS50863 B3, 1 hit
PS51745 PB1, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

A0A0D9XSI1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVTAEVEAAA AAAAGVEAST NQVSEQRMQL YNLPWKIPCE VMNVELKAEP
60 70 80 90 100
DTDEVYAQLT LLPESKQQEE NGCTEEEAPT APATHVRPRV HSFCKTLTAS
110 120 130 140 150
DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG VEWRFRHIFR
160 170 180 190 200
GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGENGELRVG VRRAMRQQTN
210 220 230 240 250
VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPA EFVVPYDRYM
260 270 280 290 300
ESLKRNYSIG MRFKMRFEGE EAPEQRFTGT IVGMGDSDPA GWPESKWRSL
310 320 330 340 350
KVRWDEASSI PRPERVSPWQ IEPAVNPPPI NPLPVPRTKR LRPNVTASPP
360 370 380 390 400
DPSAVAKEAA PKVTVESEPN GMQRAFQTQE NAAPKGSFGN SSELDTAQKS
410 420 430 440 450
VMRSSGFDRE KNNISTQRKL GSDGWMQMNR PENYSEMLSG FQPPKDVQTP
460 470 480 490 500
QGFCSLPDQI TPGHSNFWHT VNAQYQDQQG NHNMFPSSWS FMPPNTGLGL
510 520 530 540 550
NKQNYSMIQE VGGLSQRAMN TKFGNGVYAA QPGRGIEQYS GAWFGHMIPS
560 570 580 590 600
SHMDDTQPRL IKPKPLVVAH GDVQKAKGAS CKLFGIHLDS PVKSELLKSP
610 620 630 640 650
SSVVYDGTPQ TPGVEWRRQD VNEVEKCSDP SKTLKSLDAP QADSVPEKPL
660 670 680 690 700
SCQQASRNMP CKSQGGSTRS CKKVHKQGIA LGRSVDLTKF DGYEGLIAEL
710 720 730 740 750
DDMFDFTGEL KGPNKEWMVV YTDNEGDMML VGDDPWIEFC DMVHKIFIYT
760 770 780 790
REEVQRMNPG TLNSRSEDSH ANSVERGSVA REMRGCVSTS SLNSENC
Length:797
Mass (Da):88,652
Last modified:May 27, 2015 - v1
Checksum:iF144B720B3567A0F
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0D9XSH9A0A0D9XSH9_9ORYZ
Auxin response factor
770Annotation score:
A0A0D9XSH8A0A0D9XSH8_9ORYZ
Auxin response factor
869Annotation score:
A0A0D9XSI0A0A0D9XSI0_9ORYZ
Auxin response factor
854Annotation score:

Genome annotation databases

EnsemblPlantsiLPERR11G11950.4; LPERR11G11950.4; LPERR11G11950
GrameneiLPERR11G11950.4; LPERR11G11950.4; LPERR11G11950

Similar proteinsi

Cross-referencesi

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiLPERR11G11950.4; LPERR11G11950.4; LPERR11G11950
GrameneiLPERR11G11950.4; LPERR11G11950.4; LPERR11G11950

Family and domain databases

CDDicd10017 B3_DNA, 1 hit
Gene3Di2.40.330.10, 1 hit
InterProiView protein in InterPro
IPR033389 AUX/IAA_dom
IPR010525 Auxin_resp
IPR003340 B3_DNA-bd
IPR015300 DNA-bd_pseudobarrel_sf
IPR000270 PB1_dom
PfamiView protein in Pfam
PF02309 AUX_IAA, 1 hit
PF06507 Auxin_resp, 1 hit
PF02362 B3, 1 hit
SMARTiView protein in SMART
SM01019 B3, 1 hit
SUPFAMiSSF101936 SSF101936, 1 hit
PROSITEiView protein in PROSITE
PS50863 B3, 1 hit
PS51745 PB1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A0D9XSI1_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9XSI1
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: March 28, 2018
This is version 19 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again