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Protein

Polyadenylate-binding protein

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Binds the poly(A) tail of mRNA.UniRule annotation

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Polyadenylate-binding proteinUniRule annotation
Short name:
PABPUniRule annotation
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 9

Subcellular locationi

Keywords - Cellular componenti

CytoplasmUniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 113RRMInterPro annotationAdd BLAST79
Domaini123 – 195RRMInterPro annotationAdd BLAST73
Domaini214 – 291RRMInterPro annotationAdd BLAST78
Domaini317 – 397RRMInterPro annotationAdd BLAST81
Domaini536 – 613PABCInterPro annotationAdd BLAST78

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili293 – 313Sequence analysisAdd BLAST21
Coiled coili367 – 387Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the polyadenylate-binding protein type-1 family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis, RepeatSAAS annotation

Family and domain databases

Gene3Di3.30.70.330, 4 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR036053 PABP-dom
IPR006515 PABP_1234
IPR002004 PABP_HYD
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
PfamiView protein in Pfam
PF00658 PABP, 1 hit
PF00076 RRM_1, 4 hits
SMARTiView protein in SMART
SM00517 PolyA, 1 hit
SM00360 RRM, 4 hits
SM00361 RRM_1, 4 hits
SUPFAMiSSF54928 SSF54928, 3 hits
SSF63570 SSF63570, 1 hit
TIGRFAMsiTIGR01628 PABP-1234, 1 hit
PROSITEiView protein in PROSITE
PS51309 PABC, 1 hit
PS50102 RRM, 4 hits

Sequencei

Sequence statusi: Complete.

A0A0D9XBA8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAQAASSAS EGGSPASSAA AAAAAAAAAS SFPATSLYVG DLDVSVQDAQ
60 70 80 90 100
LFDVFAQVGG VVSVRVCRDV NTRRSLGYAY VNYTSPADAA RALEMLNFTP
110 120 130 140 150
INGKPIRIMY SNRDPSLRKS GAANIFIKNL DKSIDNKALY DTFCVFGNIL
160 170 180 190 200
SCKVATDASG ESKGYGFVQY ERDEAAQAAI DKLNGMLMND KKVYVGPFIR
210 220 230 240 250
KQERDNSSGY VKFNNVYVKN LSETTTEDDL KEIFGKFGTI TSAVVMREGD
260 270 280 290 300
GRSKCFGFVN FESPDDAAQA VQELNGEKFE DKEWYVGRAQ KKSEREMELK
310 320 330 340 350
EKFEKNLQEA ADKYQNTNLY LKNLDDSVDD DKLRELFAEY GTITSCKVMR
360 370 380 390 400
DSNGVSRGSG FVAFKSAEDA SRALAEMNSK MAQFSQLRPV PLAPSVGPRM
410 420 430 440 450
PMFPPGVPGV GQQLFYGQPP PAFMNPQPGF GFQQPLMPGM RPGAGPMPNF
460 470 480 490 500
IMPMVQQGQQ PQRLAGRRAG AGGMQQPMPM GQQQMISRGG RGGYRYPTGR
510 520 530 540 550
GMPDPALHGV GGGVMPSLYE MGGMPMRDAA APQSVPIGAL ATALANAAPD
560 570 580 590 600
QQRMMLGENL YPLVDQLEHE QAAKVTGMLL EMDQTEVLHL LESPEALKAK
610 620 630
VAEAMEVLRT AQQIQTNATP EQQLASLTLN DGVVSS
Length:636
Mass (Da):68,719
Last modified:May 27, 2015 - v1
Checksum:i82A5C8D99C82BCCE
GO

Genome annotation databases

EnsemblPlantsiLPERR09G00610.1; LPERR09G00610.1; LPERR09G00610
GrameneiLPERR09G00610.1; LPERR09G00610.1; LPERR09G00610

Similar proteinsi

Cross-referencesi

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiLPERR09G00610.1; LPERR09G00610.1; LPERR09G00610
GrameneiLPERR09G00610.1; LPERR09G00610.1; LPERR09G00610

Family and domain databases

Gene3Di3.30.70.330, 4 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR036053 PABP-dom
IPR006515 PABP_1234
IPR002004 PABP_HYD
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
PfamiView protein in Pfam
PF00658 PABP, 1 hit
PF00076 RRM_1, 4 hits
SMARTiView protein in SMART
SM00517 PolyA, 1 hit
SM00360 RRM, 4 hits
SM00361 RRM_1, 4 hits
SUPFAMiSSF54928 SSF54928, 3 hits
SSF63570 SSF63570, 1 hit
TIGRFAMsiTIGR01628 PABP-1234, 1 hit
PROSITEiView protein in PROSITE
PS51309 PABC, 1 hit
PS50102 RRM, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A0D9XBA8_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9XBA8
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: March 28, 2018
This is version 20 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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