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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri173 – 201C3H1-typePROSITE-ProRule annotationAdd BLAST29
Zinc fingeri307 – 337C3H1-typePROSITE-ProRule annotationAdd BLAST31

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini173 – 201C3H1-typeInterPro annotationAdd BLAST29
Domaini205 – 305RRMInterPro annotationAdd BLAST101
Domaini307 – 337C3H1-typeInterPro annotationAdd BLAST31

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili60 – 80Sequence analysisAdd BLAST21

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri173 – 201C3H1-typePROSITE-ProRule annotationAdd BLAST29
Zinc fingeri307 – 337C3H1-typePROSITE-ProRule annotationAdd BLAST31

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotation

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
IPR009145 U2AF_small
IPR000571 Znf_CCCH
PANTHERiPTHR12620 PTHR12620, 1 hit
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
PF00642 zf-CCCH, 2 hits
PRINTSiPR01848 U2AUXFACTOR
SMARTiView protein in SMART
SM00361 RRM_1, 1 hit
SM00356 ZnF_C3H1, 2 hits
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
PS50103 ZF_C3H1, 2 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A0D9VH43-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSTAVADPAA AAAAAAVTRK ERRRERKKER RRRARRGAAE AARKAAEVVA
60 70 80 90 100
ADPEVERRLR EIEEAEVDAS ERARRDFEEA ERRWLEAAAA RAAEKASAVA
110 120 130 140 150
AAAAAAGEAS TAPEGSSRDR ECKDDHGNEA EEDDEWEYVE DGPAEIIWEG
160 170 180 190 200
NEITVKKKKV KVPKKAKEKQ PIQQDKAHCP FHLKTGACRF GVRCSRVHFY
210 220 230 240 250
PDKSCTLLMK NMYNGPGLAL EQDEGLESTD EEIEQSYEEF YEDVHTEFLK
260 270 280 290 300
FGELVNFKVC RNGSIHLRGN VYVHYKSLDS ALLAYSNMNA RYFAGKQITC
310 320 330 340 350
EFVAVTRWKV AICGEYMRSR LKTCSRGVAC NFIHCFRNPG GDYEWADWDN
360 370 380 390 400
PPPKYWIRKM AALFGPSDDA VYYKGSDTPR FGQSHRSDRR RPRSSDPRYT
410 420 430 440 450
PSRSRDEDAH KQHSPRDYSH SKQERSSHTE HSRDRRESTT SDKHRSREIK
460 470 480 490 500
DKSSKYYSNI ENERESHKKM HGERQRSNHG DGRKGDHGKV RSRKDRSERQ
510 520 530 540 550
ESFEPVVSSD WPSDHTDADT TKSPSSSKST VRHHIRRSSV EAPNLERHRS
560 570 580 590 600
TSHKSTEEHH IRRSSRHRDI EDDYYDEKYD RREQSEKHRD HHDRDASDDR
610 620 630 640 650
WAPTNSDVDS DLETQYQSSK GKGSRLERKD NAPSDAETAH ERSSSRTTKL
660 670 680 690 700
RTRDGNIRRE RKRENGNSEH SNSEEEVTSD SDARDTSSEA WRSRSRSSDE
710
NRHMSRRKRS RSSRDS
Length:716
Mass (Da):82,608
Last modified:May 27, 2015 - v1
Checksum:iB4C0F3D874817049
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0D9VH41A0A0D9VH41_9ORYZ
Uncharacterized protein
664Annotation score:
A0A0D9VH42A0A0D9VH42_9ORYZ
Uncharacterized protein
742Annotation score:

Genome annotation databases

EnsemblPlantsiLPERR02G16600.3; LPERR02G16600.3; LPERR02G16600
GrameneiLPERR02G16600.3; LPERR02G16600.3; LPERR02G16600

Similar proteinsi

Cross-referencesi

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiLPERR02G16600.3; LPERR02G16600.3; LPERR02G16600
GrameneiLPERR02G16600.3; LPERR02G16600.3; LPERR02G16600

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
IPR009145 U2AF_small
IPR000571 Znf_CCCH
PANTHERiPTHR12620 PTHR12620, 1 hit
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
PF00642 zf-CCCH, 2 hits
PRINTSiPR01848 U2AUXFACTOR
SMARTiView protein in SMART
SM00361 RRM_1, 1 hit
SM00356 ZnF_C3H1, 2 hits
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
PS50103 ZF_C3H1, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A0D9VH43_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9VH43
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: July 18, 2018
This is version 24 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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