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Protein

Transcription initiation factor IIA subunit 2

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation.UniRule annotation

GO - Biological processi

Keywordsi

Biological processTranscription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor IIA subunit 2UniRule annotation
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 49TFIIA_gamma_NInterPro annotationAdd BLAST46
Domaini53 – 101TFIIA_gamma_CInterPro annotationAdd BLAST49

Sequence similaritiesi

Belongs to the TFIIA subunit 2 family.UniRule annotation

Family and domain databases

CDDicd10014 TFIIA_gamma_C, 1 hit
cd10145 TFIIA_gamma_N, 1 hit
Gene3Di1.10.287.190, 1 hit
2.30.18.10, 1 hit
InterProiView protein in InterPro
IPR009083 TFIIA_a-hlx
IPR009088 TFIIA_b-brl
IPR003194 TFIIA_gsu
IPR015871 TFIIA_gsu_C
IPR015872 TFIIA_gsu_N
PANTHERiPTHR10966 PTHR10966, 1 hit
PfamiView protein in Pfam
PF02751 TFIIA_gamma_C, 1 hit
PF02268 TFIIA_gamma_N, 1 hit
PIRSFiPIRSF009415 Hum_TFIIA_gamma, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD009224 TFIIA_gsu_N, 1 hit
SUPFAMiSSF50784 SSF50784, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0D9VAT5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATFELYRRS TIGMCLTDTL DDMVSSGGLS PELAIQVLVQ FDKSMTSALE
60 70 80 90 100
HQVKSKVTVK GHLHTYRFCD NVWTFILKDA TFKNEEITET INKVKIVACD

SKLLEAKQE
Length:109
Mass (Da):12,332
Last modified:May 27, 2015 - v1
Checksum:iCF22661EEFF2D1C0
GO

Genome annotation databases

EnsemblPlantsiLPERR01G39750.1; LPERR01G39750.1; LPERR01G39750
GrameneiLPERR01G39750.1; LPERR01G39750.1; LPERR01G39750

Similar proteinsi

Cross-referencesi

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiLPERR01G39750.1; LPERR01G39750.1; LPERR01G39750
GrameneiLPERR01G39750.1; LPERR01G39750.1; LPERR01G39750

Family and domain databases

CDDicd10014 TFIIA_gamma_C, 1 hit
cd10145 TFIIA_gamma_N, 1 hit
Gene3Di1.10.287.190, 1 hit
2.30.18.10, 1 hit
InterProiView protein in InterPro
IPR009083 TFIIA_a-hlx
IPR009088 TFIIA_b-brl
IPR003194 TFIIA_gsu
IPR015871 TFIIA_gsu_C
IPR015872 TFIIA_gsu_N
PANTHERiPTHR10966 PTHR10966, 1 hit
PfamiView protein in Pfam
PF02751 TFIIA_gamma_C, 1 hit
PF02268 TFIIA_gamma_N, 1 hit
PIRSFiPIRSF009415 Hum_TFIIA_gamma, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD009224 TFIIA_gsu_N, 1 hit
SUPFAMiSSF50784 SSF50784, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A0D9VAT5_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9VAT5
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: November 7, 2018
This is version 10 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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