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Entry version 24 (16 Jan 2019)
Sequence version 1 (27 May 2015)
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Protein

DNA-directed RNA polymerase subunit beta

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiLeersia perrieriImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri77586 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000032180 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    <p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini49 – 410RNA_pol_Rpb2_1InterPro annotationAdd BLAST362
    Domaini188 – 361RNA_pol_Rpb2_2InterPro annotationAdd BLAST174
    Domaini436 – 500RNA_pol_Rpb2_3InterPro annotationAdd BLAST65
    Domaini537 – 582RNA_pol_Rpb2_4InterPro annotationAdd BLAST46
    Domaini584 – 605RNA_pol_Rpb2_5InterPro annotationAdd BLAST22
    Domaini606 – 950RNA_pol_Rpb2_6InterPro annotationAdd BLAST345
    Domaini952 – 1042RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    <p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Family and domain databases

    Conserved Domains Database

    More...
    CDDi
    cd00653 RNA_pol_B_RPB2, 1 hit

    Gene3D Structural and Functional Annotation of Protein Families

    More...
    Gene3Di
    2.40.270.10, 1 hit
    2.40.50.150, 1 hit
    3.90.1110.10, 1 hit

    Integrated resource of protein families, domains and functional sites

    More...
    InterProi
    View protein in InterPro
    IPR015712 DNA-dir_RNA_pol_su2
    IPR007120 DNA-dir_RNAP_su2_dom
    IPR037033 DNA-dir_RNAP_su2_hyb_sf
    IPR007121 RNA_pol_bsu_CS
    IPR007644 RNA_pol_bsu_protrusion
    IPR007642 RNA_pol_Rpb2_2
    IPR037034 RNA_pol_Rpb2_2_sf
    IPR007645 RNA_pol_Rpb2_3
    IPR007646 RNA_pol_Rpb2_4
    IPR007647 RNA_pol_Rpb2_5
    IPR007641 RNA_pol_Rpb2_7
    IPR014724 RNA_pol_RPB2_OB-fold

    The PANTHER Classification System

    More...
    PANTHERi
    PTHR20856 PTHR20856, 3 hits

    Pfam protein domain database

    More...
    Pfami
    View protein in Pfam
    PF04563 RNA_pol_Rpb2_1, 1 hit
    PF04561 RNA_pol_Rpb2_2, 1 hit
    PF04565 RNA_pol_Rpb2_3, 1 hit
    PF04566 RNA_pol_Rpb2_4, 1 hit
    PF04567 RNA_pol_Rpb2_5, 1 hit
    PF00562 RNA_pol_Rpb2_6, 1 hit
    PF04560 RNA_pol_Rpb2_7, 1 hit

    PROSITE; a protein domain and family database

    More...
    PROSITEi
    View protein in PROSITE
    PS01166 RNA_POL_BETA, 1 hit

    <p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

    <p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

    This entry has 1 described isoform and 10 potential isoforms that are computationally mapped.Show allAlign All

    A0A0D9V0X4-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MAIAAAADDG AKEAPPPPPP SPTYRSLAAP VANPVDKFAL LPAFLKVRGL
    60 70 80 90 100
    VKEHIDSFNY FITKGIRIVV QANNRIEYKN VKVGQPSVKF EYNVEKITPQ
    110 120 130 140 150
    FCRLTDCTYS APVMVDIEYT VGKHYELKMK QDFIIGYLPI MLKSHACVLS
    160 170 180 190 200
    RKDEAELARY GECPLDPGGY FIVKGTEKVI LMQEQLSKNR IIIDTDSKGR
    210 220 230 240 250
    IIASVTSSTH EVKSKTVIFM DKEKIYLQLN QFTKPIPIIV VMKAMGIESD
    260 270 280 290 300
    QEVVQMVGRD PRYGDLLYPS IQECAFERIY TQEQALQYMD DKVMYPGTGT
    310 320 330 340 350
    QKEGRSKSIL RDVFVAHVLV NSGNFRPKCI YTTVMIRRMM DAILNADTFD
    360 370 380 390 400
    DKDYVGNKRL ELSGQLISLL FEDLFKTMNS NAVERLNHSS GKLHSSPLDL
    410 420 430 440 450
    SQYINEEIIT HGLERAISTG NWDIKRFRMH RKGVSQVLSR LSYMASLGYM
    460 470 480 490 500
    TRITPHFEKN RKTSGPRALQ PSQWGMLCPC DTPEGEACGL TKNLSLLTHV
    510 520 530 540 550
    TTDQEEGPLM NLCYSLGVED LSLLSGEEIH APGSFFVMFN GLILGKHRRP
    560 570 580 590 600
    QRFANTMRKL RRSGNIGEFV SIFVNEKQDG IRSFDDFLRD GLIEYLDVNE
    610 620 630 640 650
    ENNALLSRAD SLLYLLVYAQ RPLLTTKTIE LVGYDKLGAG QNATVAIMSY
    660 670 680 690 700
    SGYDIEDAIV MNKSSLDRGF GRCIAMKKYT VTKEKYENGW SDRIVMPQRD
    710 720 730 740 750
    KNGSLLKHNM QALDEDGFAA PGVIIRNHDI YVNKQTPKNT TKQCGARPTD
    760 770 780 790 800
    MDYKDSPAVY KGDDGETTVV DRVMLCSDTN DKLIIKCIIR HTRRPEVGDK
    810 820 830 840 850
    FSSRHGQKGV CGTIVQQEDF PFSESGICPD LIMNPHGFPS RMTIGKMIEL
    860 870 880 890 900
    LGGKAGVSCG QFHYGSAFGE PSGNADKVED ISYTLVKHGF SYNGKDFLYS
    910 920 930 940 950
    GILGHPCQAY IFMGPIYYQK LKHMVLDKMH ARASGPRVLL TRQPTEGRSR
    960 970 980 990 1000
    DGGLRLGEME RDCLIAYGAS MLIFERLLIS SDPYQVQVCR NCGLLGYYNH
    1010 1020 1030 1040
    RLKASYCSMC KNGENMAKMK MPYACKLLFQ ELQAMNIVPR LKLTEG
    Length:1,046
    Mass (Da):117,681
    Last modified:May 27, 2015 - v1
    <p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6159B3686A0EE074
    GO

    <p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

    There are 10 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
    EntryEntry nameProtein names
    Gene namesLengthAnnotation
    A0A0D9V0X3A0A0D9V0X3_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,092Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0X8A0A0D9V0X8_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,040Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0W8A0A0D9V0W8_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,153Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0X2A0A0D9V0X2_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,120Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0X6A0A0D9V0X6_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,037Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0X1A0A0D9V0X1_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,102Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0X0A0A0D9V0X0_9ORYZ
    DNA-directed RNA polymerase subunit...
    905Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0X5A0A0D9V0X5_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,038Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0W9A0A0D9V0W9_9ORYZ
    DNA-directed RNA polymerase subunit...
    981Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
    A0A0D9V0X7A0A0D9V0X7_9ORYZ
    DNA-directed RNA polymerase subunit...
    1,007Annotation score:

    Annotation score:2 out of 5

    <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

    Genome annotation databases

    Ensembl plant genome annotation project

    More...
    EnsemblPlantsi
    LPERR01G13780.5; LPERR01G13780.5; LPERR01G13780

    Gramene; a comparative resource for plants

    More...
    Gramenei
    LPERR01G13780.5; LPERR01G13780.5; LPERR01G13780

    <p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

    <p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

    3D structure databases

    Database of comparative protein structure models

    More...
    ModBasei
    Search...

    MobiDB: a database of protein disorder and mobility annotations

    More...
    MobiDBi
    Search...

    Protocols and materials databases

    Structural Biology KnowledgebaseSearch...

    Genome annotation databases

    EnsemblPlantsiLPERR01G13780.5; LPERR01G13780.5; LPERR01G13780
    GrameneiLPERR01G13780.5; LPERR01G13780.5; LPERR01G13780

    Family and domain databases

    CDDicd00653 RNA_pol_B_RPB2, 1 hit
    Gene3Di2.40.270.10, 1 hit
    2.40.50.150, 1 hit
    3.90.1110.10, 1 hit
    InterProiView protein in InterPro
    IPR015712 DNA-dir_RNA_pol_su2
    IPR007120 DNA-dir_RNAP_su2_dom
    IPR037033 DNA-dir_RNAP_su2_hyb_sf
    IPR007121 RNA_pol_bsu_CS
    IPR007644 RNA_pol_bsu_protrusion
    IPR007642 RNA_pol_Rpb2_2
    IPR037034 RNA_pol_Rpb2_2_sf
    IPR007645 RNA_pol_Rpb2_3
    IPR007646 RNA_pol_Rpb2_4
    IPR007647 RNA_pol_Rpb2_5
    IPR007641 RNA_pol_Rpb2_7
    IPR014724 RNA_pol_RPB2_OB-fold
    PANTHERiPTHR20856 PTHR20856, 3 hits
    PfamiView protein in Pfam
    PF04563 RNA_pol_Rpb2_1, 1 hit
    PF04561 RNA_pol_Rpb2_2, 1 hit
    PF04565 RNA_pol_Rpb2_3, 1 hit
    PF04566 RNA_pol_Rpb2_4, 1 hit
    PF04567 RNA_pol_Rpb2_5, 1 hit
    PF00562 RNA_pol_Rpb2_6, 1 hit
    PF04560 RNA_pol_Rpb2_7, 1 hit
    PROSITEiView protein in PROSITE
    PS01166 RNA_POL_BETA, 1 hit

    ProtoNet; Automatic hierarchical classification of proteins

    More...
    ProtoNeti
    Search...

    <p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

    <p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0D9V0X4_9ORYZ
    <p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0D9V0X4
    <p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
    Last sequence update: May 27, 2015
    Last modified: January 16, 2019
    This is version 24 of the entry and version 1 of the sequence. See complete history.
    <p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

    <p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported
    UniProt is an ELIXIR core data resource
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