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Protein

DNA-directed RNA polymerase subunit beta

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 1

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini100 – 461RNA_pol_Rpb2_1InterPro annotationAdd BLAST362
    Domaini239 – 412RNA_pol_Rpb2_2InterPro annotationAdd BLAST174
    Domaini487 – 551RNA_pol_Rpb2_3InterPro annotationAdd BLAST65
    Domaini588 – 633RNA_pol_Rpb2_4InterPro annotationAdd BLAST46
    Domaini635 – 680RNA_pol_Rpb2_5InterPro annotationAdd BLAST46
    Domaini687 – 1057RNA_pol_Rpb2_6InterPro annotationAdd BLAST371
    Domaini1059 – 1149RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Family and domain databases

    CDDicd00653 RNA_pol_B_RPB2, 1 hit
    Gene3Di2.40.270.10, 3 hits
    2.40.50.150, 2 hits
    3.90.1110.10, 1 hit
    InterProiView protein in InterPro
    IPR015712 DNA-dir_RNA_pol_su2
    IPR007120 DNA-dir_RNAP_su2_dom
    IPR037033 DNA-dir_RNAP_su2_hyb_sf
    IPR007121 RNA_pol_bsu_CS
    IPR007644 RNA_pol_bsu_protrusion
    IPR007642 RNA_pol_Rpb2_2
    IPR037034 RNA_pol_Rpb2_2_sf
    IPR007645 RNA_pol_Rpb2_3
    IPR007646 RNA_pol_Rpb2_4
    IPR007647 RNA_pol_Rpb2_5
    IPR007641 RNA_pol_Rpb2_7
    IPR014724 RNA_pol_RPB2_OB-fold
    PANTHERiPTHR20856 PTHR20856, 2 hits
    PfamiView protein in Pfam
    PF04563 RNA_pol_Rpb2_1, 1 hit
    PF04561 RNA_pol_Rpb2_2, 1 hit
    PF04565 RNA_pol_Rpb2_3, 1 hit
    PF04566 RNA_pol_Rpb2_4, 1 hit
    PF04567 RNA_pol_Rpb2_5, 1 hit
    PF00562 RNA_pol_Rpb2_6, 1 hit
    PF04560 RNA_pol_Rpb2_7, 1 hit
    PROSITEiView protein in PROSITE
    PS01166 RNA_POL_BETA, 1 hit

    Sequencei

    Sequence statusi: Complete.

    A0A0D9V0W8-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MAWASNGPEN ESFRQLISNT HAFLSLKKKK SNTTPSPPPL PIPSAAMAIA
    60 70 80 90 100
    AAADDGGDGE GAKEAPPPPP PSPTYRSLAA PVANPVDKFA LLPAFLKVRG
    110 120 130 140 150
    LVKEHIDSFN YFITKGIRIV VQANNRIEYK NVKVGQPSVK FEYNVEKITP
    160 170 180 190 200
    QFCRLTDCTY SAPVMVDIEY TVGKHYELKM KQDFIIGYLP IMLKSHACVL
    210 220 230 240 250
    SRKDEAELAR YGECPLDPGG YFIVKGTEKV ILMQEQLSKN RIIIDTDSKG
    260 270 280 290 300
    RIIASVTSST HEVKSKTVIF MDKEKIYLQL NQFTKPIPII VVMKAMGIES
    310 320 330 340 350
    DQEVVQMVGR DPRYGDLLYP SIQECAFERI YTQEQALQYM DDKVMYPGTG
    360 370 380 390 400
    TQKEGRSKSI LRDVFVAHVL VNSGNFRPKC IYTTVMIRRM MDAILNADTF
    410 420 430 440 450
    DDKDYVGNKR LELSGQLISL LFEDLFKTMN SNAVERLNHS SGKLHSSPLD
    460 470 480 490 500
    LSQYINEEII THGLERAIST GNWDIKRFRM HRKGVSQVLS RLSYMASLGY
    510 520 530 540 550
    MTRITPHFEK NRKTSGPRAL QPSQWGMLCP CDTPEGEACG LTKNLSLLTH
    560 570 580 590 600
    VTTDQEEGPL MNLCYSLGVE DLSLLSGEEI HAPGSFFVMF NGLILGKHRR
    610 620 630 640 650
    PQRFANTMRK LRRSGNIGEF VSIFVNEKQD GIRSFDDFLR DGLIEYLDVN
    660 670 680 690 700
    EENNALIALY EHEDQDDVRI SSITHIEIEP LTILGVVAGL IPYPHHNQSP
    710 720 730 740 750
    LCNGQASNGK YCLSRADSLL YLLVYAQRPL LTTKTIELVG YDKLGAGQNA
    760 770 780 790 800
    TVAIMSYSGY DIEDAIVMNK SSLDRGFGRC IAMKKYTVTK EKYENGWSDR
    810 820 830 840 850
    IVMPQRDKNG SLLKHNMQAL DEDGFAAPGV IIRNHDIYVN KQTPKNTTKQ
    860 870 880 890 900
    CGARPTDMDY KDSPAVYKGD DGETTVVDRV MLCSDTNDKL IIKCIIRHTR
    910 920 930 940 950
    RPEVGDKFSS RHGQKGVCGT IVQQEDFPFS ESGICPDLIM NPHGFPSRMT
    960 970 980 990 1000
    IGKMIELLGG KAGVSCGQFH YGSAFGEPSG NADKVEDISY TLVKHGFSYN
    1010 1020 1030 1040 1050
    GKDFLYSGIL GHPCQAYIFM GPIYYQKLKH MVLDKMHARA SGPRVLLTRQ
    1060 1070 1080 1090 1100
    PTEGRSRDGG LRLGEMERDC LIAYGASMLI FERLLISSDP YQVQVCRNCG
    1110 1120 1130 1140 1150
    LLGYYNHRLK ASYCSMCKNG ENMAKMKMPY ACKLLFQELQ AMNIVPRLKL

    TEG
    Length:1,153
    Mass (Da):129,194
    Last modified:May 27, 2015 - v1
    Checksum:iD6126B59617A60A9
    GO

    Genome annotation databases

    EnsemblPlantsiLPERR01G13780.1; LPERR01G13780.1; LPERR01G13780
    GrameneiLPERR01G13780.1; LPERR01G13780.1; LPERR01G13780

    Similar proteinsi

    Entry informationi

    Entry nameiA0A0D9V0W8_9ORYZ
    AccessioniPrimary (citable) accession number: A0A0D9V0W8
    Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
    Last sequence update: May 27, 2015
    Last modified: April 25, 2018
    This is version 21 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

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