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Entry version 19 (18 Sep 2019)
Sequence version 1 (29 Apr 2015)
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Protein

WD_REPEATS_REGION domain-containing protein

Gene
N/A
Organism
Oryza barthii
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
WD_REPEATS_REGION domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza barthiiImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri65489 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000026960 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
65489.OBART03G31630.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 603WD_REPEATS_REGIONInterPro annotationAdd BLAST603
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati26 – 67WDPROSITE-ProRule annotationAdd BLAST42
Repeati68 – 109WDPROSITE-ProRule annotationAdd BLAST42
Repeati137 – 178WDPROSITE-ProRule annotationAdd BLAST42
Repeati181 – 222WDPROSITE-ProRule annotationAdd BLAST42
Repeati324 – 365WDPROSITE-ProRule annotationAdd BLAST42
Repeati366 – 407WDPROSITE-ProRule annotationAdd BLAST42
Repeati408 – 441WDPROSITE-ProRule annotationAdd BLAST34
Repeati477 – 518WDPROSITE-ProRule annotationAdd BLAST42
Repeati521 – 562WDPROSITE-ProRule annotationAdd BLAST42

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1133 – 1172DisorderedSequence analysisAdd BLAST40

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1141 – 1163AcidicSequence analysisAdd BLAST23

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.130.10.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR010714 Coatomer_asu_C
IPR006692 Coatomer_WD-assoc_reg
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04053 Coatomer_WDAD, 1 hit
PF06957 COPI_C, 2 hits
PF00400 WD40, 9 hits

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00320 GPROTEINBRPT

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00320 WD40, 11 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50978 SSF50978, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00678 WD_REPEATS_1, 2 hits
PS50082 WD_REPEATS_2, 9 hits
PS50294 WD_REPEATS_REGION, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0D3FN57-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDWVEGGDDY KIKVWNYKTH RCLFTLHGHL DYIRTVQFHH ECPWIVSASD
60 70 80 90 100
DQTIRIWNWQ SRTCVAVLTG HNHYVMCASF HPKEDLVVSA SLDQTVRVWD
110 120 130 140 150
ISALRKKSVS PADDILRLTQ MNTDLFGGVD AVVKYVLEGH DRGVNWASFH
160 170 180 190 200
PTLPLIVSGA DDRQVKIWRM NDTKAWEVDT LRGHMNNVSC VMFHAKQDII
210 220 230 240 250
VSNSEDKSIR IWDATKRTGI QTFRREHDRF WILSAHPEMN LLAAGHDSGM
260 270 280 290 300
IVFKLERERP AFSDSSELNY DYRNPFVVCG ATYVPIYRGQ KDVSCPYCGS
310 320 330 340 350
RFVTSIEGQL CTICELAVVG ADASGLHDGP VRGVHFHATQ PLFVSGGDDY
360 370 380 390 400
KIKVWNYKTH RCLFTLHGHL DYIRTVQFHH EYPWIVSASD DQTIRIWNWQ
410 420 430 440 450
SRTCVAVLTG HNHYVMCASF HPKEDLVVSA SLDQTVRVWD IGALRKKTVS
460 470 480 490 500
PADDILRLTQ MNTDLFGGVD AVVKYVLEGH DRGVNWASFH PTLPLIVSGA
510 520 530 540 550
DDRQVKLWRM NDTKAWEVDT LRGHMNNVSC VMFHAKQDII VSNSEDKSIR
560 570 580 590 600
IWDATKRTGI QTFRREHDRF WILSAHPEMN LLAAGHDSGM IVFKLERERP
610 620 630 640 650
AFSVSGDTVF YVKDRFLRFF EFTTQKEVQL APIRRPGSVS LNQSPKTLSY
660 670 680 690 700
SPTENAVLIC SDVDGGSYEL YIVPKDSAGK ADYLQDAKKG AGGSAVFVAR
710 720 730 740 750
NRFAVLEKSS NQVLVRNLKN EIVKKSPLPI ATDAIYYAGT GSLLCKAEDR
760 770 780 790 800
VTIFDLQQRL ILGELQAPSV KYVVWSSDME SVALLSKHAV VIANKKLVHR
810 820 830 840 850
CTLHETIRVK SGAWDENGVF IYTTLNHIKY CLPNGDSGII KTLDVPIYIT
860 870 880 890 900
RVIGNNIFCL DRDGKNKLVT VDASEYIFKL ALLRKRYDHV MSMIKNSQLC
910 920 930 940 950
GQAVISYLQQ KGFPEVALHF VKDEKTRFNL ALESGNIQIA VASAKEIDDK
960 970 980 990 1000
DHWYRLGIEA LRQGNVGIVE YAYQRTKNFE RLAFLYLITG YMDKVGFMCK
1010 1020 1030 1040 1050
IAGQNNNLMG QFHNALYLGD AMKRVEILEN AGQLPLAYIT ATTHGLTEIA
1060 1070 1080 1090 1100
DRLAAELGEN IPSLPEGKAR SLLIPPAPLT ASGDWPLLRV MRGIFEGGLD
1110 1120 1130 1140 1150
ATGKAELEED DEAAGADWGD EDLDIVDASE AMANGGDGFD AEEGEANEED
1160 1170 1180 1190 1200
GEEGGWDLED LELPPEAETP KNAGNARSAV FVAPPPGMPV SLIWTQKSSL
1210 1220 1230 1240 1250
AGEHAAAGNF DTAMRLLSRQ LGIKNFAPLK PLFLDLHMGS HSYLRALATA
1260 1270 1280 1290 1300
PIIPVAVEKG WSESASPNVR GPPALVFTFP QMEDRLKAAY KATTDGKFPE
1310 1320 1330 1340 1350
ALRQFLSILH TIPLIVVDSR REVDEVKELI EIVREYVLGL RMELKRKELR
1360 1370 1380 1390 1400
DDVNRQQELA AYFTNCKLQR VHMRLVLGSA MGLCYKQKNF ATAEHFARML
1410 1420 1430 1440 1450
LENNPNEAQA RRARQVQQQC SGKKDSSELN YDYRNPFVVC GATYVPIYRG
1460 1470 1480 1490
QKDVSCPYCG SRFVPSIEGQ LCTICELAVV GADASGLLCS PTQSR
Length:1,495
Mass (Da):167,719
Last modified:April 29, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDDEAC443A313EC31
GO

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
OBART03G31630.1; OBART03G31630.1; OBART03G31630

Gramene; a comparative resource for plants

More...
Gramenei
OBART03G31630.1; OBART03G31630.1; OBART03G31630

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi65489.OBART03G31630.1

Genome annotation databases

EnsemblPlantsiOBART03G31630.1; OBART03G31630.1; OBART03G31630
GrameneiOBART03G31630.1; OBART03G31630.1; OBART03G31630

Family and domain databases

Gene3Di2.130.10.10, 2 hits
InterProiView protein in InterPro
IPR010714 Coatomer_asu_C
IPR006692 Coatomer_WD-assoc_reg
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF04053 Coatomer_WDAD, 1 hit
PF06957 COPI_C, 2 hits
PF00400 WD40, 9 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 11 hits
SUPFAMiSSF50978 SSF50978, 2 hits
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 2 hits
PS50082 WD_REPEATS_2, 9 hits
PS50294 WD_REPEATS_REGION, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0D3FN57_9ORYZ
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0D3FN57
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 29, 2015
Last sequence update: April 29, 2015
Last modified: September 18, 2019
This is version 19 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
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