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Entry version 25 (17 Jun 2020)
Sequence version 1 (29 Apr 2015)
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Protein
Submitted name:

Uncharacterized protein

Gene

B456_009G313100

Organism
Gossypium raimondii (New World cotton)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:B456_009G313100Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiGossypium raimondii (New World cotton)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri29730 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000032304 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 9

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
29730.Gorai.009G313100.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A0A0D2TY86

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini16 – 57JmjNInterPro annotationAdd BLAST42
Domaini284 – 453JmjCInterPro annotationAdd BLAST170
Domaini1406 – 1435C2H2-typeInterPro annotationAdd BLAST30
Domaini1436 – 1465C2H2-typeInterPro annotationAdd BLAST30
Domaini1466 – 1496C2H2-typeInterPro annotationAdd BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni234 – 280DisorderedSequence analysisAdd BLAST47
Regioni1346 – 1371DisorderedSequence analysisAdd BLAST26

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1357 – 1371PolyampholyteSequence analysisAdd BLAST15

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...
OMAi
LPDKQVK

Database of Orthologous Groups

More...
OrthoDBi
664180at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003347 JmjC_dom
IPR003349 JmjN
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02373 JmjC, 1 hit
PF02375 JmjN, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00558 JmjC, 1 hit
SM00545 JmjN, 1 hit
SM00355 ZnF_C2H2, 4 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57667 SSF57667, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51184 JMJC, 1 hit
PS51183 JMJN, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0D2TY86-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGNVEIPKWL KRLPLAPEFR PTDTEFADPI AYISKIEKEA GAYGICKIIP
60 70 80 90 100
PLPKPSKRYV FNNLNRSLSK SPELGSDVNI GSVSNFGDSG GDVRERRAVF
110 120 130 140 150
TTRHQELGRS GKRMKGVVSS PQCGAQKQVW QSGEIYTLEQ FESKSKTFAK
160 170 180 190 200
SLLGLLKEVS PLHIEALFWK VASEKSIYVE YANDVPGSGF GEPEGQFRYF
210 220 230 240 250
HRRRRKRMSY RRENSECRKD EIDAVNNSQM VEINNTSVKS DPDTRVETPK
260 270 280 290 300
SSTTLSAIAS DVNSHSKRKS GNASNDMEGT AGWKLSNSPW NLQVIARSAG
310 320 330 340 350
SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW
360 370 380 390 400
YAVPGDHAFA FEEVIRAEAY GGNIDRLAAL SLLGEKTTLL SPELIVASGI
410 420 430 440 450
PCCRLIQNPG EFVVTFPRAY HVGFSHGFNC GEAANFGTPQ WLQVAKDAAV
460 470 480 490 500
RRAAMNYLPM LSHQQLLYLL TMSFMSRVPR SLLPGARSSR LRDRLKEERE
510 520 530 540 550
VLVKKAFVED LLTENKLLSL LLKRGSTYRA IMWDPLLLPY TSRDSELPSR
560 570 580 590 600
TATDSTIMQE NVSDIHGEDK SDQKNLLDEM CFYMENLNYL YSNDDDLTCD
610 620 630 640 650
FQVDSGTLVC VACGILGYPF MSVVQPSEGA AMEFLPVDHL SSQGPTVLVP
660 670 680 690 700
KNAHSCPIEG SVSDNLNHVL DLSLPSKQAA LPSITKFSDG WDTSNKYLRP
710 720 730 740 750
RVFCLEHAVQ VEELLQSKGG AKMLVICHSD YQKIKANAIP VADDIGIPFN
760 770 780 790 800
YNDVPLDAAS EEDLNLINFA IDDEHDEIQE DWTSKLGVNL RYCVKVRKNS
810 820 830 840 850
SFKQVQHALP LSGLFTDKYS SLELFNIKWQ SRKSRSKGKL NHPSPSKPCE
860 870 880 890 900
SVEMKVDEIM MEKLDSDISK YGQKIIQYSR RKKRKSDYST GGGGGVELLK
910 920 930 940 950
NDLPREDSAA SIQFLDKHGG NKSKINARSE SIQAQLEVPT TSVVQRDQNR
960 970 980 990 1000
IVEETGPDDE AQSLIACASS IKKCENKLME RNSENGEISP AEKCSKFCLV
1010 1020 1030 1040 1050
ADGEVYLENT ATATKVCNPV SEQQSDEPTS RYGLINGNSA SSHSAQRCAG
1060 1070 1080 1090 1100
RYNQGLEDIT VPKFSINGGA FSGMTSENEV QQGTEATSRN NSEVIIRSEV
1110 1120 1130 1140 1150
PKVPFAAADS CDGTVSQNKA QKQEIQINAR KEVLLSGSFT SAGIDHQSTD
1160 1170 1180 1190 1200
LSVEEYSTIS KNPGAEEDCH TDVALDVEVL QEIQATKGTG GDEVITCSDL
1210 1220 1230 1240 1250
PILEKQPTPV MMEACSEIQQ DSSSSKKLCV GATADADSHE NDPNRYEKNE
1260 1270 1280 1290 1300
ESASCCHTPI NQTTIPIQKY SRAHRETCAT VNVNDGTDVC SSVENGDLES
1310 1320 1330 1340 1350
AMVNCKSNAM GRKRKRELEE TCQKVGSDGF IRSPCEGLRP RAWKDATSSF
1360 1370 1380 1390 1400
DADKASSEGL QTKETRKPST HAHRKIIIET GSHGCDLEGC HMSFKTKEEL
1410 1420 1430 1440 1450
RLHKRNRCPY EGCGKKFRSH KYAVLHQRVH DDDRPLKCPW KGCSMSFKWA
1460 1470 1480 1490
WARTEHIRVH TGVRPYKCKV EGCGLSFRFV SDFSRHRRKT GHYIDS
Length:1,496
Mass (Da):166,439
Last modified:April 29, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7160E1476D8BC27C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM001748 Genomic DNA Translation: KJB60576.1

NCBI Reference Sequences

More...
RefSeqi
XP_012447777.1, XM_012592323.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
KJB60576; KJB60576; B456_009G313100

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
105770944

Gramene; a comparative resource for plants

More...
Gramenei
KJB60576; KJB60576; B456_009G313100

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
gra:105770944

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM001748 Genomic DNA Translation: KJB60576.1
RefSeqiXP_012447777.1, XM_012592323.1

3D structure databases

SMRiA0A0D2TY86
ModBaseiSearch...

Protein-protein interaction databases

STRINGi29730.Gorai.009G313100.1

Genome annotation databases

EnsemblPlantsiKJB60576; KJB60576; B456_009G313100
GeneIDi105770944
GrameneiKJB60576; KJB60576; B456_009G313100
KEGGigra:105770944

Phylogenomic databases

OMAiLPDKQVK
OrthoDBi664180at2759

Family and domain databases

InterProiView protein in InterPro
IPR003347 JmjC_dom
IPR003349 JmjN
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02373 JmjC, 1 hit
PF02375 JmjN, 1 hit
SMARTiView protein in SMART
SM00558 JmjC, 1 hit
SM00545 JmjN, 1 hit
SM00355 ZnF_C2H2, 4 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS51184 JMJC, 1 hit
PS51183 JMJN, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0D2TY86_GOSRA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0D2TY86
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 29, 2015
Last sequence update: April 29, 2015
Last modified: June 17, 2020
This is version 25 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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