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Entry version 21 (02 Dec 2020)
Sequence version 1 (01 Apr 2015)
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Protein
Submitted name:

Indolepyruvate ferredoxin oxidoreductase

Gene

TH3_07020

Organism
Thalassospira xiamenensis M-5 = DSM 17429
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionOxidoreductaseImportedARBA annotation
LigandPyruvateImported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Indolepyruvate ferredoxin oxidoreductaseImported (EC:1.2.7.8Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:TH3_07020Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiThalassospira xiamenensis M-5 = DSM 17429Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1123366 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeThalassospira
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007127 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
1123366.TH3_13639

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG1014, Bacteria
COG4231, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_009166_1_0_5

Database of Orthologous Groups

More...
OrthoDBi
37279at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.50.920, 1 hit
3.40.920.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR019752, Pyrv/ketoisovalerate_OxRed_cat
IPR002869, Pyrv_flavodox_OxRed_cen
IPR029061, THDP-binding
IPR011766, TPP_enzyme-bd_C
IPR009014, Transketo_C/PFOR_II

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01558, POR, 1 hit
PF02775, TPP_enzyme_C, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52518, SSF52518, 2 hits
SSF52922, SSF52922, 1 hit
SSF53323, SSF53323, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0B4XTC0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAQLAAISLD DKYTLEEGRV YLTGIQALVR LPLMQRQLDA RAGLNTAGCI
60 70 80 90 100
SGYRGSPLGG LDQQLWRAKK FLTRQQIEFQ AGVNEDLAAT VVWGSQQVNM
110 120 130 140 150
YKDAKYDGVF GMWYGKGPGV DRSGDVFKHA NYAGTSKHGG VLVLAGDDHS
160 170 180 190 200
CKSSTLPHQT EYAFIDAQIP VLNPSGVQDI LDFGIHGWAM SRYSGCWVAM
210 220 230 240 250
KTIAETVESS AAVDVAPDRI TPIIPDNFDM PEGGLHIRWP DTPKDQEHRL
260 270 280 290 300
MKYKLYAALA YARANKLNKT VIDSPNARLG IITTGKAYLD VMQAFDDLGI
310 320 330 340 350
SEADAAKIGI RVLKVGMSWP LNRDDVREFA MGLEEIIVVE EKRAVMENQV
360 370 380 390 400
KEQLYNWRED VRPTVIGKFD EKGEWILPSM DELTPARIAV VLAQRIKRFY
410 420 430 440 450
DSPKIHERID WLEQKEREIA EPRPDVARIP WFCPGCPHNS STKVPEGSRA
460 470 480 490 500
MAGIGCHYMV NWMDRSTETF THMGGEGVTW IGQAPFTNTK HVFQNLGDGT
510 520 530 540 550
YYHSGSLAVR AAVAAGVNIT YKILFNDAVA MTGGQPVDGP LTVPQITRQM
560 570 580 590 600
ADEGVKRIIV LSDEPDKYPV PSHFADGVDI RHRDELDNTQ KELREIEGVT
610 620 630 640 650
ILIFDQTCAA EKRRRRKRKL MVDPPKRVFI NDLVCEGCGD CGEKSNCLAV
660 670 680 690 700
VPVETEFGRK RAIDQSACNK DFSCLNGFCP SFVTIEGGAL RKPEAAAKSG
710 720 730 740 750
NAGDAVFASL PRPTLPDITD PWSVLITGVG GTGVVTIGAL LGMAAHIEGK
760 770 780 790 800
GIVGLDMAGL AQKGGAVVSH IRFADTQEKL HAARIPAGEA NVVLGCDLLV
810 820 830 840 850
AASFEGLAKM RRNFTQAVIN THETVTGAFT RNPDFQLKSN EHMKVISDAC
860 870 880 890 900
GADAVNFVEG SDIATRLMGN SIATNLFMLG VAWQRGLIPI TEEALMQAID
910 920 930 940 950
LNGVAIDMNK QSFYWGRLFA HDPKRVLDVI GPNEAEAHPI ATTLSDMVAK
960 970 980 990 1000
RKAFLTDYQN ATYANRFVAL VDRVAAAEKR LDDGDDLART VAKYYFKLLA
1010 1020 1030 1040 1050
YKDEYEVARL YTDPAFRAKL AKNFTGDYKI RFHLAPPAFA DKDPETGHLK
1060 1070 1080 1090 1100
KQAFGPWMMS AFGILAKFKF LRGTAIDPFG RTHERKMERQ LIADYEALVD
1110 1120 1130 1140 1150
EVINGLNHDN ARIANALLAL PEQIRGYGHI KDRNIDKVKT RKAELLEQFR
1160
NPPEHLKAAE
Length:1,160
Mass (Da):128,201
Last modified:April 1, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i05F21F28D50C6693
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP004388 Genomic DNA Translation: AJD51524.1

NCBI Reference Sequences

More...
RefSeqi
WP_007090956.1, NZ_FTON01000013.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AJD51524; AJD51524; TH3_07020

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
txi:TH3_07020

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP004388 Genomic DNA Translation: AJD51524.1
RefSeqiWP_007090956.1, NZ_FTON01000013.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi1123366.TH3_13639

Genome annotation databases

EnsemblBacteriaiAJD51524; AJD51524; TH3_07020
KEGGitxi:TH3_07020

Phylogenomic databases

eggNOGiCOG1014, Bacteria
COG4231, Bacteria
HOGENOMiCLU_009166_1_0_5
OrthoDBi37279at2

Family and domain databases

Gene3Di3.40.50.920, 1 hit
3.40.920.10, 1 hit
InterProiView protein in InterPro
IPR019752, Pyrv/ketoisovalerate_OxRed_cat
IPR002869, Pyrv_flavodox_OxRed_cen
IPR029061, THDP-binding
IPR011766, TPP_enzyme-bd_C
IPR009014, Transketo_C/PFOR_II
PfamiView protein in Pfam
PF01558, POR, 1 hit
PF02775, TPP_enzyme_C, 1 hit
SUPFAMiSSF52518, SSF52518, 2 hits
SSF52922, SSF52922, 1 hit
SSF53323, SSF53323, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0B4XTC0_9PROT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0B4XTC0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 1, 2015
Last sequence update: April 1, 2015
Last modified: December 2, 2020
This is version 21 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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