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Protein
Submitted name:

Syncrip, isoform J

Gene

Syp

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: FlyBase

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Enzyme and pathway databases

ReactomeiR-DME-72163 mRNA Splicing - Major Pathway
R-DME-75094 Formation of the Editosome

Names & Taxonomyi

Protein namesi
Submitted name:
Syncrip, isoform JImported
Gene namesi
Name:SypImported
Synonyms:AI945337Imported, anon-WO0118547.613Imported, cg17838Imported, Dmel\CG17838Imported, l(3)03806Imported, sypImported
ORF Names:CG17838Imported, Dmel_CG17838Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0038826 Syp

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

ExpressionAtlasiA0A0B4KHT5 baseline and differential

Structurei

3D structure databases

SMRiA0A0B4KHT5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini206 – 285RRMInterPro annotationAdd BLAST80
Domaini287 – 369RRMInterPro annotationAdd BLAST83
Domaini382 – 452RRMInterPro annotationAdd BLAST71

Phylogenomic databases

eggNOGiKOG0117 Eukaryota
ENOG410XTJ5 LUCA
GeneTreeiENSGT00550000074366
OrthoDBiEOG091G0EUB

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR006535 HnRNP_R/Q_splicing_fac
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 3 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SUPFAMiSSF54928 SSF54928, 2 hits
TIGRFAMsiTIGR01648 hnRNP-R-Q, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 14 potential isoforms that are computationally mapped.Show allAlign All

A0A0B4KHT5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLSQMEASKV QKDEGGGEAL SRTILKTPSS FRTPSPIPSC SKMAEGNGEL
60 70 80 90 100
LDDINQKADD RGDGERTEDY PKLLEYGLDK KVAGKLDEIY KTGKLAHAEL
110 120 130 140 150
DERALDALKE FPVDGALNVL GQFLESNLEH VSNKSAYLCG VMKTYRQKSR
160 170 180 190 200
ASQQGVAAPA TVKGPDEDKI KKILERTGYT LDVTTGQRKY GGPPPHWEGN
210 220 230 240 250
VPGNGCEVFC GKIPKDMYED ELIPLFENCG IIWDLRLMMD PMTGTNRGYA
260 270 280 290 300
FVTFTNREAA VNAVRQLNDF EIRTGKKIGV TISFNNHRLF VGNIPKNRDR
310 320 330 340 350
DELIEEFSKH APGLYEVIIY SSPDDKKKNR GFCFLEYESH KAASLAKRRL
360 370 380 390 400
GTGRIKVWGC DIIVDWADPQ EEPDEQTMSK VKVLYVRNLT QDVSEDKLKE
410 420 430 440 450
QFEQYGKVER VKKIKDYAFI HFEDRDSAVE AMRGLNGKEI GASNIEVSLA
460 470 480 490 500
KPPSDKKKKE EILRARERRM MQMMQARPGI VGFETLSPYR NLSPTHPSIM
510 520 530 540 550
SLTPMRPGAR MPLRTPIPRE YDYFYDFFGF SDYRQGGSFG NNVSYYDDMY
560 570 580 590 600
RWIDGDYNYY DYPNGGGGGS GGGGGSVSGG TVLPLSAGGS QNSPMASGQR
610 620 630 640 650
SARGSASGPS ASPSLMGVGR GHGITVPRGR VVGQRGSISR LGAQTVPQAA
660 670 680 690 700
GAAAAAGQAA AAVAQRGATG QGAPAATGGF RGVLPTRPSA RGTQHVKPLQ
710 720 730 740 750
NLPVVGKRKF DGGHQNPADV KRRYPSGLIG NGGSWGSLPL PQQPLGTNGE
760
QWYMDTFSAW S
Length:761
Mass (Da):83,261
Last modified:April 1, 2015 - v1
Checksum:i67E3BE5FF6772986
GO

Computationally mapped potential isoform sequencesi

There are 14 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0B4KHI4A0A0B4KHI4_DROME
Syncrip, isoform Q
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
761Annotation score:
A4V364A4V364_DROME
Syncrip, isoform F
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
529Annotation score:
Q8IN48Q8IN48_DROME
Syncrip, isoform E
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
571Annotation score:
Q9VDI8Q9VDI8_DROME
Syncrip, isoform D
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
707Annotation score:
Q8IN47Q8IN47_DROME
Syncrip, isoform A
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
563Annotation score:
A8JR54A8JR54_DROME
Syncrip, isoform H
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
534Annotation score:
Q7KSA0Q7KSA0_DROME
Syncrip, isoform B
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
711Annotation score:
A0A0B4KGK8A0A0B4KGK8_DROME
Syncrip, isoform R
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
569Annotation score:
Q95TW4Q95TW4_DROME
GH28335p
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
529Annotation score:
A0A0B4KH24A0A0B4KH24_DROME
Syncrip, isoform O
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
611Annotation score:
There are more potential isoformsShow all

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA Translation: AGB96157.1
RefSeqiNP_001262777.1, NM_001275848.1
UniGeneiDm.11889

Genome annotation databases

EnsemblMetazoaiFBtr0334712; FBpp0306764; FBgn0038826
GeneIDi42460

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA Translation: AGB96157.1
RefSeqiNP_001262777.1, NM_001275848.1
UniGeneiDm.11889

3D structure databases

SMRiA0A0B4KHT5
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0334712; FBpp0306764; FBgn0038826
GeneIDi42460

Organism-specific databases

CTDi6855
FlyBaseiFBgn0038826 Syp

Phylogenomic databases

eggNOGiKOG0117 Eukaryota
ENOG410XTJ5 LUCA
GeneTreeiENSGT00550000074366
OrthoDBiEOG091G0EUB

Enzyme and pathway databases

ReactomeiR-DME-72163 mRNA Splicing - Major Pathway
R-DME-75094 Formation of the Editosome

Miscellaneous databases

ChiTaRSiSyp fly
GenomeRNAii42460

Gene expression databases

ExpressionAtlasiA0A0B4KHT5 baseline and differential

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR006535 HnRNP_R/Q_splicing_fac
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 3 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SUPFAMiSSF54928 SSF54928, 2 hits
TIGRFAMsiTIGR01648 hnRNP-R-Q, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A0B4KHT5_DROME
AccessioniPrimary (citable) accession number: A0A0B4KHT5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 1, 2015
Last sequence update: April 1, 2015
Last modified: November 7, 2018
This is version 33 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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