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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Mycolicibacterium setense
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotationImported

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotationSAAS annotation
Gene namesi
Name:rplMUniRule annotation
ORF Names:A5761_23775Imported, QQ25_08305Imported, QQ44_05750Imported
OrganismiMycolicibacterium setenseImported
Taxonomic identifieri431269 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycolicibacterium
Proteomesi
  • UP000031017 Componenti: Unassembled WGS sequence
  • UP000031004 Componenti: Unassembled WGS sequence
  • UP000093867 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotationSAAS annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotationSAAS annotation

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0B2YDC9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPTYTPKAGD TTHQWYVIDA QDVVLGRLAV EAAKLLRGKH KPTFTPNVDG
60 70 80 90 100
GDFVIVINAE KIAVSGDKLT KKFAYSHSGY PGGLRKRTIG QLLEKHPTRV
110 120 130 140
VENAILGMLP HTKLGRQIQK KLKVYAGPDH PHAAQQPIPY EIKQVAQ
Length:147
Mass (Da):16,226
Last modified:March 4, 2015 - v1
Checksum:i3C2AB165EC223CAB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JTJW01000005 Genomic DNA Translation: KHO23196.1
JTLZ01000004 Genomic DNA Translation: KHO27038.1
LZSL01000081 Genomic DNA Translation: OBB11784.1
RefSeqiWP_029106976.1, NZ_LZSL01000081.1

Genome annotation databases

EnsemblBacteriaiKHO23196; KHO23196; QQ25_08305
KHO27038; KHO27038; QQ44_05750
OBB11784; OBB11784; A5761_23775

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JTJW01000005 Genomic DNA Translation: KHO23196.1
JTLZ01000004 Genomic DNA Translation: KHO27038.1
LZSL01000081 Genomic DNA Translation: OBB11784.1
RefSeqiWP_029106976.1, NZ_LZSL01000081.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiKHO23196; KHO23196; QQ25_08305
KHO27038; KHO27038; QQ44_05750
OBB11784; OBB11784; A5761_23775

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A0B2YDC9_9MYCO
AccessioniPrimary (citable) accession number: A0A0B2YDC9
Entry historyiIntegrated into UniProtKB/TrEMBL: March 4, 2015
Last sequence update: March 4, 2015
Last modified: July 18, 2018
This is version 27 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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