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Protein
Submitted name:

U5 small nuclear ribonucleoprotein 40 kDa protein

Gene

Snrnp40

Organism
Zeugodacus cucurbitae (Melon fruit fly) (Bactrocera cucurbitae)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
U5 small nuclear ribonucleoprotein 40 kDa proteinImported
Gene namesi
Name:Snrnp40Imported
ORF Names:g.9166Imported
OrganismiZeugodacus cucurbitae (Melon fruit fly) (Bactrocera cucurbitae)Imported
Taxonomic identifieri28588 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaTephritoideaTephritidaeZeugodacusZeugodacus

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini51 – 348WD_REPEATS_REGIONInterPro annotationAdd BLAST298
    Repeati51 – 84WDPROSITE-ProRule annotationAdd BLAST34
    Repeati94 – 135WDPROSITE-ProRule annotationAdd BLAST42
    Repeati136 – 178WDPROSITE-ProRule annotationAdd BLAST43
    Repeati185 – 219WDPROSITE-ProRule annotationAdd BLAST35
    Repeati221 – 255WDPROSITE-ProRule annotationAdd BLAST35
    Repeati282 – 312WDPROSITE-ProRule annotationAdd BLAST31
    Repeati313 – 348WDPROSITE-ProRule annotationAdd BLAST36

    Keywords - Domaini

    WD repeatPROSITE-ProRule annotation

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 5 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit

    Sequencei

    Sequence statusi: Complete.

    A0A0A1WHJ8-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MGTKRPGTSL VLAHENKRTK NDLIAYTNRD KALMESGVRR TSNLMAPIML
    60 70 80 90 100
    LEGHEGEIFT TEFHPDGDLL LSSGFDRQIY IWNVYGECEN VMVMSGHSGA
    110 120 130 140 150
    VLEAHFSTDG SNIYTCATDK TVAIWDIVTG QRVRKLKGHT NFVNTVHRTR
    160 170 180 190 200
    RGLQMLCSGS DDRTIRIWDA RKKNAVHTLE SPFQVTAACF NDIGDQVISG
    210 220 230 240 250
    GIDNEIKIWD IRKQQQVLHR LRGHTDTITG ISLSPDGSYL LSNSMDNTLR
    260 270 280 290 300
    IWDVRPYAPA ERCVKIFQGH QHNFEKNLLR CSWSPDGSKI SAGSADRYVY
    310 320 330 340
    IWDTTSRRII YKLPGHNGSV NDVDFHTKEP LILSASSDKT LYLGEIED
    Length:348
    Mass (Da):39,214
    Last modified:February 4, 2015 - v1
    Checksum:i392E9C5A1D8876FC
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    GBXI01015980 Transcribed RNA Translation: JAC98311.1
    RefSeqiXP_011178529.1, XM_011180227.1

    Genome annotation databases

    GeneIDi105209681

    Similar proteinsi

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    GBXI01015980 Transcribed RNA Translation: JAC98311.1
    RefSeqiXP_011178529.1, XM_011180227.1

    3D structure databases

    ModBaseiSearch...
    MobiDBiSearch...

    Protocols and materials databases

    Structural Biology KnowledgebaseSearch...

    Genome annotation databases

    GeneIDi105209681

    Organism-specific databases

    CTDi9410

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 5 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit
    ProtoNetiSearch...

    Entry informationi

    Entry nameiA0A0A1WHJ8_ZEUCU
    AccessioniPrimary (citable) accession number: A0A0A1WHJ8
    Entry historyiIntegrated into UniProtKB/TrEMBL: February 4, 2015
    Last sequence update: February 4, 2015
    Last modified: May 23, 2018
    This is version 23 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    UniProt is an ELIXIR core data resource
    Main funding by: National Institutes of Health

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