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Entry version 28 (11 Dec 2019)
Sequence version 1 (04 Feb 2015)
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Protein
Submitted name:

Collagen type XV-B alpha 1 chain

Gene

col15a1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Collagen type XV-B alpha 1 chainImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:col15a1bImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7955 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

Zebrafish Information Network genome database

More...
ZFINi
ZDB-GENE-070912-689 col15a1b

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 17Sequence analysisAdd BLAST17
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500198562618 – 1245Sequence analysisAdd BLAST1228

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Disulfide bondSAAS annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini34 – 222LAM_G_DOMAINInterPro annotationAdd BLAST189

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni222 – 680DisorderedSequence analysisAdd BLAST459
Regioni716 – 975DisorderedSequence analysisAdd BLAST260
Regioni1022 – 1046DisorderedSequence analysisAdd BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi223 – 238PolyampholyteSequence analysisAdd BLAST16
Compositional biasi249 – 265PolyampholyteSequence analysisAdd BLAST17
Compositional biasi302 – 322PolyampholyteSequence analysisAdd BLAST21
Compositional biasi327 – 341Pro-richSequence analysisAdd BLAST15
Compositional biasi413 – 430Pro-richSequence analysisAdd BLAST18
Compositional biasi455 – 481Pro-richSequence analysisAdd BLAST27
Compositional biasi545 – 564Pro-richSequence analysisAdd BLAST20
Compositional biasi597 – 613Pro-richSequence analysisAdd BLAST17
Compositional biasi814 – 829Pro-richSequence analysisAdd BLAST16
Compositional biasi914 – 938Pro-richSequence analysisAdd BLAST25
Compositional biasi953 – 967Pro-richSequence analysisAdd BLAST15
Compositional biasi1024 – 1038PolarSequence analysisAdd BLAST15

Keywords - Domaini

CollagenSAAS annotationImported, SignalSequence analysis

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00247 Endostatin-like, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.10.100.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR016186 C-type_lectin-like/link_sf
IPR008160 Collagen
IPR010515 Collagenase_NC10/endostatin
IPR013320 ConA-like_dom_sf
IPR016187 CTDL_fold
IPR001791 Laminin_G

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391 Collagen, 7 hits
PF06482 Endostatin, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00210 TSPN, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49899 SSF49899, 1 hit
SSF56436 SSF56436, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A0A1I9R6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKFRLLSWLV GAHLALGYLS SALHVMEERG SKGHLILTDL VGMPLPPSVS
60 70 80 90 100
FITGYEGYPA YSFGPHANVG RLTQSFVPEP FFTDFAIIVT VKPSSSRGGV
110 120 130 140 150
LFAITDPSQT IVQLGLALTP VEDQTQRIVL YYSEPRSANS AEVASFKVPD
160 170 180 190 200
MTQQWSRFTL SVERQEVRLY MDCDEYHIAP FKRSQQPLSF KPGSGIFVAN
210 220 230 240 250
AGSTGLERFV GSIQQLVIKP DPRAAEEQCE EDDPSLQASG DRSGDGDYDD
260 270 280 290 300
EEEHARREET FGQTNNKEKT LRPTSPVEAP PIQSPDIEEG GFSGHVTPID
310 320 330 340 350
ERLLRGTYKT DETGERVGQK GERGEPGPAG PPGPPGPPGT SVPIRHSGQP
360 370 380 390 400
GPRGPQGPIG QPGGRGRPGK DGQPGSKGED GKPGQRGQTG PPGLPGESGV
410 420 430 440 450
KGEKGDPGVG RTGLPGPPGP PGPPGPSKPV KVPYGFDALG SGFGDADIDT
460 470 480 490 500
ELLRGPPGPP GPPGKPGPPG PNSPLGGLLP GPPGAPGKDG RDGQSGLPGV
510 520 530 540 550
PGQDGLPGQQ RPKGAKGEHG IRGPPGPKGE NGDPGQRGPP GPFGTMGPRG
560 570 580 590 600
LPGPPGPPGP PGPINNNFMV DTSKDFEGSG ESGSFLGTGI LKGYQGPPGL
610 620 630 640 650
PGPPGPQGPP GANGPPGSSV KGERGSPGPD GIHGLAGLPG ARGPKGDKGN
660 670 680 690 700
PGEKGERGRD GLNITGPPGP PGPPGPIINF QDLFLNDTAA KLNLTKIRGL
710 720 730 740 750
PGPMGPEGLP GRAGFPGPRG PKGEIGFPGV QGPPGLKGDK GEPGVSIAAD
760 770 780 790 800
GSIITSLRGP RGPKGTKGDI GLAGPHGIPG PIGPPGLKGG YGIPGRPGRP
810 820 830 840 850
GIAGRKGDKG DASGPPGPPG PPGPPGPPGR VIGLNGVNNN NSQQGDKGEK
860 870 880 890 900
GDEGNPGLSG TPVPHAYVGP KGDNGYNGQK GEKGDPGLPG PPGLPGRTGL
910 920 930 940 950
VGPKGESIVG PPGDTGAPGP PGLPGYGSPG PQGPPGGPGP SGTSSLYSSA
960 970 980 990 1000
ASLPGPPGPP GPPGVPGYGN PVSTYKNSQT LMRESSQAAE GTMGYVIDKS
1010 1020 1030 1040 1050
ELYIRVRGGW KKIELGELIP VPEDSSSSAL SQGLSRPSDR SVPRVHSQEL
1060 1070 1080 1090 1100
KSFLPGYNLL PDTTHSMPAL HLVALNAPFS GDMHGIRGAD YQCYQQARAR
1110 1120 1130 1140 1150
GLTSTYRAFL SSHLQDLSTI VKKADRFNLP VVNLKGEVLF SSWMAMFSGN
1160 1170 1180 1190 1200
GGVFDPLTPI YSFDGRNVLT DQAWSQKLVW HGSSTVGIRM TTNYCEAWRT
1210 1220 1230 1240
GDMAVTGQAS LLQTGRLLGQ HTRSCSNHFI ILCIENSYIQ HPGRN
Length:1,245
Mass (Da):127,652
Last modified:February 4, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE2C69F084CCBE221
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
LK391962 mRNA Translation: CDR98488.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LK391962 mRNA Translation: CDR98488.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Organism-specific databases

ZFINiZDB-GENE-070912-689 col15a1b

Family and domain databases

CDDicd00247 Endostatin-like, 1 hit
Gene3Di3.10.100.10, 1 hit
InterProiView protein in InterPro
IPR016186 C-type_lectin-like/link_sf
IPR008160 Collagen
IPR010515 Collagenase_NC10/endostatin
IPR013320 ConA-like_dom_sf
IPR016187 CTDL_fold
IPR001791 Laminin_G
PfamiView protein in Pfam
PF01391 Collagen, 7 hits
PF06482 Endostatin, 2 hits
SMARTiView protein in SMART
SM00210 TSPN, 1 hit
SUPFAMiSSF49899 SSF49899, 1 hit
SSF56436 SSF56436, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A0A1I9R6_DANRE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A0A1I9R6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 4, 2015
Last sequence update: February 4, 2015
Last modified: December 11, 2019
This is version 28 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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