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Entry version 24 (07 Oct 2020)
Sequence version 1 (07 Jan 2015)
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Protein

Condensin complex subunit 1

Gene

N309_11303

Organism
Tinamus guttatus (White-throated tinamou)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processDNA condensationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Condensin complex subunit 1ARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:N309_11303Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiTinamus guttatus (White-throated tinamou)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri94827 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesPalaeognathaeTinamiformesTinamidaeTinamus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000053641 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

ChromosomeARBA annotation, NucleusARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini51 – 214Cnd1_NInterPro annotationAdd BLAST164
Domaini1040 – 1208Cnd1InterPro annotationAdd BLAST169

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni921 – 949DisorderedSequence analysisAdd BLAST29
Regioni1292 – 1340DisorderedSequence analysisAdd BLAST49

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili470 – 490Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1299 – 1316PolarSequence analysisAdd BLAST18

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the CND1 (condensin subunit 1) family.ARBA annotation

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR026971, CND1/NCAPD3
IPR032682, Cnd1_C
IPR007673, Condensin_cplx_su1
IPR024324, Condensin_cplx_su1_N

The PANTHER Classification System

More...
PANTHERi
PTHR14222, PTHR14222, 1 hit
PTHR14222:SF2, PTHR14222:SF2, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12717, Cnd1, 1 hit
PF12922, Cnd1_N, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF017127, Condensin_D2, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371, SSF48371, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Fragment.

A0A099ZIR5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
YAVQEVRSAQ ELAAPLAAFR AAVQARGALA VLQHFDTLYS LLHHFRAVGA
60 70 80 90 100
ALKEDALELM VQAVSRHSND LPAIVGDRGL SHADRAAHLN ALKMNCYLLT
110 120 130 140 150
GLVEAFEMAT CKSDLVEVDP GGKNKKNHAK ASGFSWEEER EPVIRLLMQL
160 170 180 190 200
LQLDLRRLWN NLVVEEEFVS LMTGSCYRIL ENPSIGLQKH RATREAVTHL
210 220 230 240 250
LAAALVHYDH MFSATLKITQ MLQHFEHVAP VFAQAVSLWA TEYGLKSLVG
260 270 280 290 300
ELLREIGQKC PQDLARDASG IKGYAVFITE LAEQIPAVVV SHMSVLLHHL
310 320 330 340 350
DGENYTMRNA ILAAVAEALL KVLNGDNLEE SARGTRDQFL DILQAHVCDT
360 370 380 390 400
SGFVRSRVLQ LFTRIVQCKA LPLTRFQDVV SLAVGRLEDK SVVVVKNAIQ
410 420 430 440 450
LLAAFLSNNP FSCKLSSTDL VEPLKKEVQK LQEMRKKHRA TTAATVTPEE
460 470 480 490 500
EWEAMLPEIR AAVQELLQPL QGEEEEVLEV EATAEETSER IACLLRKLNY
510 520 530 540 550
KDAVRLTQKA LCHFHSLEPF SDPKGETEEA TILNVLKRLH TGLCPGENTE
560 570 580 590 600
DTPRGSCSAV TKDAALEEQP RTDLVKQEML VQYLQDAYNF SVKITEALGL
610 620 630 640 650
VSKMMYENSV SVVQEAIEFF VTVSQFSMPQ AVLGVRRMLP LVWSKEAGIK
660 670 680 690 700
EAVLNAYRRL YLSPSGDSER ARAQSLVRSL SLIVVDASLG TIQCLEEIIS
710 720 730 740 750
EFVQKDEIKP AVIQLLWEQF TEKSPCSLLE RHAAMILLGM MARGKPEIIG
760 770 780 790 800
SNLDVLVTVG FSEKVCEDHR LAQEVCSAIS KLATTPKPAL GKNKAPFRLP
810 820 830 840 850
QTHELFGSLS KAVSQGFAQP SGHWIPFVEA AITIIYQLAE GAEEICARIL
860 870 880 890 900
QECSQQALEK LQDADGLTAG EEKAAVGSLH PWLLVLWHLV SLVGQVAVQQ
910 920 930 940 950
VTYLEVSVSA ELRRRRILRE EQKAKQRSKG SAKKQRPQST GNETTMEEEL
960 970 980 990 1000
GLVGASADDT EAELIRSICE TELLDDKYLI SAFIPLVLKI CNNPGLYSDP
1010 1020 1030 1040 1050
ALSAAAALSL GKVCMISSEF CDSHLRLLFT MMEKSTLPGV RSNLMIAAGD
1060 1070 1080 1090 1100
LAIRFPNLVE PWTPHLYARL RDPCQNVRQT AGLVMTHLIL KDMVKVKGQV
1110 1120 1130 1140 1150
SEMAALLVDP EETIMGLAQN FFSELSNKAS RALCPAQDNA IYNLLPDIIS
1160 1170 1180 1190 1200
RLSDPECGVD EESFHTIMRH LFSYITKDKQ TESLVEKLCQ RFRTARTERQ
1210 1220 1230 1240 1250
YRDLSHCLTL LPLTERGLHK LQDNFDCFAD KLQDPAVYSC FQAVLLRFRR
1260 1270 1280 1290 1300
AVSKTESKAL AEELEQKLQA CHSLGLVSAE LCQEGSETRV PELAKWRPTG
1310 1320 1330 1340
GSQHQSLSTA NRNADESFVT PPPRAPRSCQ RTQKRRPPKK
Length:1,340
Mass (Da):148,984
Last modified:January 7, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBD5126C22938E54A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.<p><a href='/help/non_ter' target='_top'>More...</a></p>Non-terminal residuei1Imported1
Non-terminal residuei1340Imported1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
KL895118 Genomic DNA Translation: KGL82289.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KL895118 Genomic DNA Translation: KGL82289.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR026971, CND1/NCAPD3
IPR032682, Cnd1_C
IPR007673, Condensin_cplx_su1
IPR024324, Condensin_cplx_su1_N
PANTHERiPTHR14222, PTHR14222, 1 hit
PTHR14222:SF2, PTHR14222:SF2, 1 hit
PfamiView protein in Pfam
PF12717, Cnd1, 1 hit
PF12922, Cnd1_N, 1 hit
PIRSFiPIRSF017127, Condensin_D2, 1 hit
SUPFAMiSSF48371, SSF48371, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A099ZIR5_TINGU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A099ZIR5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 7, 2015
Last sequence update: January 7, 2015
Last modified: October 7, 2020
This is version 24 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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