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UniProtKB - A0A099ZIR5 (A0A099ZIR5_TINGU)

Entry version 24 (07 Oct 2020)
Sequence version 1 (07 Jan 2015)
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Protein

Condensin complex subunit 1

Gene

N309_11303

Organism
Tinamus guttatus (White-throated tinamou)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processDNA condensationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Condensin complex subunit 1ARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:N309_11303Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiTinamus guttatus (White-throated tinamou)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri94827 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archelosauria › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Palaeognathae › Tinamiformes › Tinamidae › Tinamus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000053641 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

ChromosomeARBA annotation, NucleusARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini51 – 214Cnd1_NInterPro annotationAdd BLAST164
Domaini1040 – 1208Cnd1InterPro annotationAdd BLAST169

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni921 – 949DisorderedSequence analysisAdd BLAST29
Regioni1292 – 1340DisorderedSequence analysisAdd BLAST49

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili470 – 490Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1299 – 1316PolarSequence analysisAdd BLAST18

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the CND1 (condensin subunit 1) family.ARBA annotation

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.25.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR026971, CND1/NCAPD3
IPR032682, Cnd1_C
IPR007673, Condensin_cplx_su1
IPR024324, Condensin_cplx_su1_N

The PANTHER Classification System

More...PANTHERi		PTHR14222, PTHR14222, 1 hit
PTHR14222:SF2, PTHR14222:SF2, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF12717, Cnd1, 1 hit
PF12922, Cnd1_N, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF017127, Condensin_D2, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48371, SSF48371, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Fragment.

A0A099ZIR5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
YAVQEVRSAQ ELAAPLAAFR AAVQARGALA VLQHFDTLYS LLHHFRAVGA 
        60         70         80         90        100
ALKEDALELM VQAVSRHSND LPAIVGDRGL SHADRAAHLN ALKMNCYLLT 
       110        120        130        140        150
GLVEAFEMAT CKSDLVEVDP GGKNKKNHAK ASGFSWEEER EPVIRLLMQL 
       160        170        180        190        200
LQLDLRRLWN NLVVEEEFVS LMTGSCYRIL ENPSIGLQKH RATREAVTHL 
       210        220        230        240        250
LAAALVHYDH MFSATLKITQ MLQHFEHVAP VFAQAVSLWA TEYGLKSLVG 
       260        270        280        290        300
ELLREIGQKC PQDLARDASG IKGYAVFITE LAEQIPAVVV SHMSVLLHHL 
       310        320        330        340        350
DGENYTMRNA ILAAVAEALL KVLNGDNLEE SARGTRDQFL DILQAHVCDT 
       360        370        380        390        400
SGFVRSRVLQ LFTRIVQCKA LPLTRFQDVV SLAVGRLEDK SVVVVKNAIQ 
       410        420        430        440        450
LLAAFLSNNP FSCKLSSTDL VEPLKKEVQK LQEMRKKHRA TTAATVTPEE 
       460        470        480        490        500
EWEAMLPEIR AAVQELLQPL QGEEEEVLEV EATAEETSER IACLLRKLNY 
       510        520        530        540        550
KDAVRLTQKA LCHFHSLEPF SDPKGETEEA TILNVLKRLH TGLCPGENTE 
       560        570        580        590        600
DTPRGSCSAV TKDAALEEQP RTDLVKQEML VQYLQDAYNF SVKITEALGL 
       610        620        630        640        650
VSKMMYENSV SVVQEAIEFF VTVSQFSMPQ AVLGVRRMLP LVWSKEAGIK 
       660        670        680        690        700
EAVLNAYRRL YLSPSGDSER ARAQSLVRSL SLIVVDASLG TIQCLEEIIS 
       710        720        730        740        750
EFVQKDEIKP AVIQLLWEQF TEKSPCSLLE RHAAMILLGM MARGKPEIIG 
       760        770        780        790        800
SNLDVLVTVG FSEKVCEDHR LAQEVCSAIS KLATTPKPAL GKNKAPFRLP 
       810        820        830        840        850
QTHELFGSLS KAVSQGFAQP SGHWIPFVEA AITIIYQLAE GAEEICARIL 
       860        870        880        890        900
QECSQQALEK LQDADGLTAG EEKAAVGSLH PWLLVLWHLV SLVGQVAVQQ 
       910        920        930        940        950
VTYLEVSVSA ELRRRRILRE EQKAKQRSKG SAKKQRPQST GNETTMEEEL 
       960        970        980        990       1000
GLVGASADDT EAELIRSICE TELLDDKYLI SAFIPLVLKI CNNPGLYSDP 
      1010       1020       1030       1040       1050
ALSAAAALSL GKVCMISSEF CDSHLRLLFT MMEKSTLPGV RSNLMIAAGD 
      1060       1070       1080       1090       1100
LAIRFPNLVE PWTPHLYARL RDPCQNVRQT AGLVMTHLIL KDMVKVKGQV 
      1110       1120       1130       1140       1150
SEMAALLVDP EETIMGLAQN FFSELSNKAS RALCPAQDNA IYNLLPDIIS 
      1160       1170       1180       1190       1200
RLSDPECGVD EESFHTIMRH LFSYITKDKQ TESLVEKLCQ RFRTARTERQ 
      1210       1220       1230       1240       1250
YRDLSHCLTL LPLTERGLHK LQDNFDCFAD KLQDPAVYSC FQAVLLRFRR 
      1260       1270       1280       1290       1300
AVSKTESKAL AEELEQKLQA CHSLGLVSAE LCQEGSETRV PELAKWRPTG 
      1310       1320       1330       1340
GSQHQSLSTA NRNADESFVT PPPRAPRSCQ RTQKRRPPKK
Length:1,340
Mass (Da):148,984
Last modified:January 7, 2015 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBD5126C22938E54A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.<p><a href='/help/non_ter' target='_top'>More...</a></p>Non-terminal residuei1Imported1
Non-terminal residuei1340Imported1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KL895118 Genomic DNA Translation: KGL82289.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KL895118 Genomic DNA Translation: KGL82289.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR026971, CND1/NCAPD3
IPR032682, Cnd1_C
IPR007673, Condensin_cplx_su1
IPR024324, Condensin_cplx_su1_N
PANTHERiPTHR14222, PTHR14222, 1 hit
PTHR14222:SF2, PTHR14222:SF2, 1 hit
PfamiView protein in Pfam
PF12717, Cnd1, 1 hit
PF12922, Cnd1_N, 1 hit
PIRSFiPIRSF017127, Condensin_D2, 1 hit
SUPFAMiSSF48371, SSF48371, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A099ZIR5_TINGU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A099ZIR5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 7, 2015
Last sequence update: January 7, 2015
Last modified: October 7, 2020
This is version 24 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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