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Protein
Submitted name:

RCG24674, isoform CRA_e

Gene

Synm

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
RCG24674, isoform CRA_eImported
Submitted name:
SyneminImported
Gene namesi
Name:SynmImported
ORF Names:rCG_24674Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi727872 Synm

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Intermediate filamentPROSITE-ProRule annotationSAAS annotation

Expressioni

Gene expression databases

BgeeiENSRNOG00000014030

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 322IF rodInterPro annotationAdd BLAST312

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili15 – 49Sequence analysisAdd BLAST35
Coiled coili78 – 98Sequence analysisAdd BLAST21
Coiled coili106 – 154Sequence analysisAdd BLAST49
Coiled coili192 – 293Sequence analysisAdd BLAST102

Sequence similaritiesi

Belongs to the intermediate filament family.PROSITE-ProRule annotationSAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410IH92 Eukaryota
ENOG4111GBF LUCA
GeneTreeiENSGT00730000110953

Family and domain databases

InterProiView protein in InterPro
IPR001664 IF
IPR018039 IF_conserved
IPR039008 IF_rod_dom
IPR030634 SYNM
PANTHERiPTHR23239 PTHR23239, 1 hit
PTHR23239:SF194 PTHR23239:SF194, 1 hit
PfamiView protein in Pfam
PF00038 Filament, 1 hit
SMARTiView protein in SMART
SM01391 Filament, 1 hit
PROSITEiView protein in PROSITE
PS00226 IF_ROD_1, 1 hit
PS51842 IF_ROD_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A096MK54-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSWRLQTSS EKAELQELNA RLYEYVCRVR ELERENLLLE EELRSRLSRE
60 70 80 90 100
DRWAEDQALY AEEARSLRQQ LDELSWSTAL AEGERDALRR ELLDLQREGL
110 120 130 140 150
EASTARGRLD AELEAQRREL EEALGARAAL EALLGRLEAE RRDLDAAHER
160 170 180 190 200
QVRELRARAS SLTMHFRARA TGPAAPPPRL RDVHDSYALL VAESWRESMQ
210 220 230 240 250
LYEDEVRELE QALRRGQESR LQAEDEARLC AQEADALRNQ ALELEQLRAR
260 270 280 290 300
LEDELLRMRE EYGMQAEERQ RVIDSLEDEK DALTLAMADR LREYQELLQV
310 320 330 340 350
KTGLSLEVAT YRALLEGESN PEILIWTENI ENVPRESRNT SYRYTDSVLQ
360 370 380 390 400
RKNEKNLFPR RKTPWAAVNH SSTLYSNGPG HLDSQTTTAV GNAARRGFLT
410 420 430 440 450
SCYSSSATTS QQKPLEKTVS SQASLRPVIP THGFLRNTDA QVKTFSHGPK
460 470 480 490 500
AEGMGDTLTR RATESVITRE SYRGHQGNVA AGAVNSTQSN ERTVILGKKL
510 520 530 540 550
ETQATKEQER DRSGVVKLKP EEKMFDSKEK ASEERNLRWE ELTKLDARER
560 570 580 590 600
ESQHLRNEAK GKETLTGRSR KEREVPISLE VSRGSKSEVS TIHLQSSGRK
610 620 630 640 650
DSANSREREV KTKETKFHLD GKDTAGSLQS DSTTETIAEN IVTTILKQFT
660 670 680 690 700
QSPGAEENVS SLPDTKVTYL DRKEFPGDRK TKTEIVMESK LTEDVDVSDE
710 720 730 740 750
AGLDYLLSKD VKEVGLKGKS TETVIGEMIN LGLKGREGRA KVVNVEIVEE
760 770 780 790 800
PMSYVGGGKV EFSTPFQVEE VDDVSPSPKG FIEEEEGEGE THMAFSMHQR
810 820 830 840 850
QRTNQPQVNV PHVEEVTEAG DSEGEQSYFV STPDEYPGGH DREDDGSVYG
860 870 880 890 900
QIHIEEESTI RYSWQDEIAQ GTWRRKARGD TGEEKHMKVL EVPSASLGGA
910 920 930 940 950
FGSAHVKEEA SGELHAEPTI IEKEIKIPHE FHTSIKGVFS SEPRHQLVEV
960 970 980 990 1000
IGQLEETLPE RMKEELSALT RQSQGEPGSV SVDVKKVQSS AGGSVTLMAE
1010 1020 1030 1040 1050
VNLSQTVDAD QLDLEELSRD EAGEIEKAVE SVVRESLTKR SSPVPRSPDR
1060 1070 1080 1090 1100
EDGEEAPAGG FLFKRWATRE LYSPSGEKDD TDRVFHSSDQ RVTQGPVSAT
1110 1120 1130 1140 1150
VEVTSPTGFV QSHVLEDVSQ SVRHVKLGPT EMWRTEQVSY GGPTSPVVEM
1160 1170 1180 1190 1200
GVSDTRAIRS WTRDTGSEVE AHSVSHHGGW RVAHSRDEQS ASTSSQASAG
1210 1220 1230 1240 1250
DAHQARGEKG TEQAGFDKTV QLQRMVDQRS VASDEKKVAL LYLDNEEEEE

GEGWF
Length:1,255
Mass (Da):140,761
Last modified:November 26, 2014 - v1
Checksum:i554470D11F6581BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07004173 Genomic DNA No translation available.
AABR07071918 Genomic DNA No translation available.
AC127946 Genomic DNA No translation available.
CH473980 Genomic DNA Translation: EDM08467.1
RefSeqiXP_006229399.1, XM_006229337.2
UniGeneiRn.46362

Genome annotation databases

EnsembliENSRNOT00000076511; ENSRNOP00000068384; ENSRNOG00000014030
GeneIDi308709

Similar proteinsi

Entry informationi

Entry nameiA0A096MK54_RAT
AccessioniPrimary (citable) accession number: A0A096MK54
Entry historyiIntegrated into UniProtKB/TrEMBL: November 26, 2014
Last sequence update: November 26, 2014
Last modified: May 23, 2018
This is version 32 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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