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Protein
Submitted name:

Protocadherin beta-15

Gene

PCDHB15

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Protocadherin beta-15Imported
Gene namesi
Name:PCDHB15Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

EuPathDBiHostDB:ENSG00000113248.5
HGNCiHGNC:8686 PCDHB15

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

MembraneSAAS annotation

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000113248

PTM / Processingi

Proteomic databases

PeptideAtlasiA0A096LPC0

Expressioni

Gene expression databases

BgeeiENSG00000113248 Expressed in 111 organ(s), highest expression level in left coronary artery
ExpressionAtlasiA0A096LPC0 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliA0A096LPC0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 63CAInterPro annotationAdd BLAST60

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG3594 Eukaryota
ENOG410XQHI LUCA
GeneTreeiENSGT00900000140770

Family and domain databases

InterProiView protein in InterPro
IPR002126 Cadherin
IPR015919 Cadherin-like
IPR020894 Cadherin_CS
IPR030733 PCDHB15
PANTHERiPTHR24028:SF97 PTHR24028:SF97, 1 hit
PfamiView protein in Pfam
PF00028 Cadherin, 1 hit
PRINTSiPR00205 CADHERIN
SMARTiView protein in SMART
SM00112 CA, 1 hit
SUPFAMiSSF49313 SSF49313, 2 hits
PROSITEiView protein in PROSITE
PS00232 CADHERIN_1, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A0A096LPC0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEPAGERFPE QRKYPELVLD TELDREEQAE LRLTLTAVDG GSPPRSGTVQ
60 70 80 90 100
ILILVLDAND NAPEFVQALY EVQVPENSPV GSLVVKVSAR DLDTGTNGEI
110 120
SYSLYYSSQE IDKPFELSSL SGEIRLIKK
Length:129
Mass (Da):14,283
Last modified:November 26, 2014 - v1
Checksum:iF359E036D368ED42
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9Y5E8PCDBF_HUMAN
Protocadherin beta-15
PCDHB15
787Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei129Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC244517 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000623671; ENSP00000485504; ENSG00000113248
UCSCiuc063iag.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC244517 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliA0A096LPC0
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PeptideAtlasiA0A096LPC0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000623671; ENSP00000485504; ENSG00000113248
UCSCiuc063iag.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000113248.5
HGNCiHGNC:8686 PCDHB15
OpenTargetsiENSG00000113248
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3594 Eukaryota
ENOG410XQHI LUCA
GeneTreeiENSGT00900000140770

Gene expression databases

BgeeiENSG00000113248 Expressed in 111 organ(s), highest expression level in left coronary artery
ExpressionAtlasiA0A096LPC0 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR002126 Cadherin
IPR015919 Cadherin-like
IPR020894 Cadherin_CS
IPR030733 PCDHB15
PANTHERiPTHR24028:SF97 PTHR24028:SF97, 1 hit
PfamiView protein in Pfam
PF00028 Cadherin, 1 hit
PRINTSiPR00205 CADHERIN
SMARTiView protein in SMART
SM00112 CA, 1 hit
SUPFAMiSSF49313 SSF49313, 2 hits
PROSITEiView protein in PROSITE
PS00232 CADHERIN_1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A096LPC0_HUMAN
AccessioniPrimary (citable) accession number: A0A096LPC0
Entry historyiIntegrated into UniProtKB/TrEMBL: November 26, 2014
Last sequence update: November 26, 2014
Last modified: September 12, 2018
This is version 29 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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