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UniProtKB - A0A094ZFD1 (A0A094ZFD1_SCHHA)

Entry version 21 (02 Dec 2020)
Sequence version 1 (26 Nov 2014)
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Protein

Condensin complex subunit 2

Gene

MS3_01311

Organism
Schistosoma haematobium (Blood fluke)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processCell cycle, Cell division, MitosisARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Condensin complex subunit 2ARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:MS3_01311Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchistosoma haematobium (Blood fluke)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6185 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Spiralia › Lophotrochozoa › Platyhelminthes › Trematoda › Digenea › Strigeidida › Schistosomatoidea › Schistosomatidae › Schistosoma

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

ChromosomeARBA annotation, CytoplasmARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 93DisorderedSequence analysisAdd BLAST93
Regioni171 – 212DisorderedSequence analysisAdd BLAST42
Regioni646 – 670DisorderedSequence analysisAdd BLAST25
Regioni747 – 775DisorderedSequence analysisAdd BLAST29

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi14 – 28PolyampholyteSequence analysisAdd BLAST15
Compositional biasi171 – 185PolarSequence analysisAdd BLAST15
Compositional biasi190 – 212PolyampholyteSequence analysisAdd BLAST23
Compositional biasi646 – 664PolyampholyteSequence analysisAdd BLAST19

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the CND2 (condensin subunit 2) family.ARBA annotation

Phylogenomic databases

Database of Orthologous Groups

More...OrthoDBi		702078at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR022816, Condensin_barren_su2

The PANTHER Classification System

More...PANTHERi		PTHR13108, PTHR13108, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF05786, Cnd2, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF017126, Condensin_H, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A094ZFD1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLLSESRANL FDSFKADSPD DEFSKPKRCL KSGSSPHKSL NMIILEDEND 
        60         70         80         90        100
DDDERLARRK SRLLEPHPAS VNSPGASSTA ARRRADAAAP RGIPQAQIGE 
       110        120        130        140        150
HYGNCIRLAA ENKITAKNAF NLHLIDYMSE MIKKEDFASF QIASSSLDAG 
       160        170        180        190        200
AKIYAGRVDA VHQETYQVLT GLGRSGNPQN GENESNADNV DDDDKTHSHS 
       210        220        230        240        250
KPEQKKKTAS HRDIIHKQLN KIRIKTLADK IDVDPLFQHQ TAAYDEGGTA 
       260        270        280        290        300
ELRLNQLSTA NASCELILDS STPVMLRTLT TTQPITPMNV TNVTEFLSSM 
       310        320        330        340        350
LARSLNQLSI CSTLQSFRFT DWDLNKNSFD SNSQMNWDTN SQPINLFNQD 
       360        370        380        390        400
NNDDGDDNGF NPLPVQDDSF CDNIHEDINL DPVCETGMQV EVNGSSAEAV 
       410        420        430        440        450
NNNIGSDNLL ANIPVTENTT ATNTTTTTTT ADGELFVSCL KNMLDKQYEH 
       460        470        480        490        500
FGKLNDHLLG MWAGPEHWRK KAKRPKLDGT VKLNEDNPEK NFEHGLGESE 
       510        520        530        540        550
TGIVDKVINS RKMTKSKRDK AQRICYAETI KPSENRTRSG RLSRRDWLKN 
       560        570        580        590        600
VLSSGVENST ASNSTIFKET YRQKANRQMN MLPSEWSDSR QTLYQLVNRD 
       610        620        630        640        650
VILRPNILPD GRNLTNCNNI TSENADYMVG TNELCAVLTV GSSERPVDNE 
       660        670        680        690        700
YEDADGGLDQ LRNHQDDDDD DDDAIIPFEC AFTQNAGYND GELTDIELIS 
       710        720        730        740        750
QPNKVARIEI GYARTAKMIN VQRLKCAMWG FLEHTVPHVG LNIPSQSPLS 
       760        770        780        790        800
VASTASAPDT NSLVDDPTSH NVNENQKQYP MNEDVIESDS GRTSCLPKVH 
       810        820        830        840        850
GARGFSEVID NLSGRISWQM AKELSISIAL NCLLHLSNEK QLYLENVDSF 
       860        870        880        890        900
SDIYISQGLP SFELKHLETY TNICDNNAIH HGDIISGNKP KLNNQKRNKT 
       910 
RHIRPSTLDS WLIEND
Length:916
Mass (Da):102,154
Last modified:November 26, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB780E70EC3E67DFC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KL250534 Genomic DNA Translation: KGB33150.1

NCBI Reference Sequences

More...RefSeqi		XP_012792925.1, XM_012937471.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		24589074

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		shx:MS3_01311

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KL250534 Genomic DNA Translation: KGB33150.1
RefSeqiXP_012792925.1, XM_012937471.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

GeneIDi24589074
KEGGishx:MS3_01311

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		24589074

Phylogenomic databases

OrthoDBi702078at2759

Family and domain databases

InterProiView protein in InterPro
IPR022816, Condensin_barren_su2
PANTHERiPTHR13108, PTHR13108, 1 hit
PfamiView protein in Pfam
PF05786, Cnd2, 1 hit
PIRSFiPIRSF017126, Condensin_H, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A094ZFD1_SCHHA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A094ZFD1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 26, 2014
Last sequence update: November 26, 2014
Last modified: December 2, 2020
This is version 21 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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