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Protein
Submitted name:

U5 small nuclear ribonucleoprotein 40 kDa protein

Gene

N322_08477

Organism
Cariama cristata (Red-legged seriema)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
U5 small nuclear ribonucleoprotein 40 kDa proteinImported
Gene namesi
ORF Names:N322_08477Imported
OrganismiCariama cristata (Red-legged seriema)Imported
Taxonomic identifieri54380 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeCariamiformesCariamidaeCariama
Proteomesi
  • UP000054116 Componenti: Unassembled WGS sequence

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini18 – 313WD_REPEATS_REGIONInterPro annotationAdd BLAST296
    Repeati18 – 51WDPROSITE-ProRule annotationAdd BLAST34
    Repeati61 – 102WDPROSITE-ProRule annotationAdd BLAST42
    Repeati103 – 145WDPROSITE-ProRule annotationAdd BLAST43
    Repeati145 – 186WDPROSITE-ProRule annotationAdd BLAST42
    Repeati187 – 221WDPROSITE-ProRule annotationAdd BLAST35
    Repeati248 – 278WDPROSITE-ProRule annotationAdd BLAST31
    Repeati279 – 313WDPROSITE-ProRule annotationAdd BLAST35

    Keywords - Domaini

    WD repeatPROSITE-ProRule annotation

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 5 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit

    Sequencei

    Sequence statusi: Fragment.

    A0A091MEV8-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    LPQGPPRCSS LQAPIMLLSG HEGEVYCCKF HPNGNTLASA GFDRLILLWN
    60 70 80 90 100
    VYGDCDNYAT LKGHSGAVME LHYNTDGSML FSASTDKTVA VWDSETGERV
    110 120 130 140 150
    KRLKGHTSFV NSCYPARRGP QLVCTGSDDG TVKLWDIRKK AAVQTFQNTY
    160 170 180 190 200
    QVLAVTFNDT SDQIISGGID NDIKVWDLRQ NKLTYTMRGH ADSVTGLSLS
    210 220 230 240 250
    SEGSYLLSNA MDNTVRIWDV RPFAPKERCV KIFQGNVHNF EKNLLRCSWS
    260 270 280 290 300
    PDGSKIAGGS ADRFVYVWDT TSRRILYKLP GHAGSVNELA FHPEEPIILS
    310
    ASSDKRLYMG EIQ
    Length:313
    Mass (Da):34,738
    Last modified:November 26, 2014 - v1
    Checksum:i787EA03AAD05B12C
    GO

    Experimental Info

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Non-terminal residuei1Imported1
    Non-terminal residuei313Imported1

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    KK528901 Genomic DNA Translation: KFP69139.1
    RefSeqiXP_009706847.1, XM_009708545.1

    Genome annotation databases

    GeneIDi104168087

    Similar proteinsi

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    KK528901 Genomic DNA Translation: KFP69139.1
    RefSeqiXP_009706847.1, XM_009708545.1

    3D structure databases

    ModBaseiSearch...
    MobiDBiSearch...

    Protocols and materials databases

    Structural Biology KnowledgebaseSearch...

    Genome annotation databases

    GeneIDi104168087

    Organism-specific databases

    CTDi9410

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 5 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit
    ProtoNetiSearch...

    Entry informationi

    Entry nameiA0A091MEV8_CARIC
    AccessioniPrimary (citable) accession number: A0A091MEV8
    Entry historyiIntegrated into UniProtKB/TrEMBL: November 26, 2014
    Last sequence update: November 26, 2014
    Last modified: May 23, 2018
    This is version 20 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported
    UniProt is an ELIXIR core data resource
    Main funding by: National Institutes of Health

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